DreALTA0017682-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24959023-24959525:-
Coord C1 exon
chr11:24959283-24959525
Coord A exon
chr11:24959181-24959199
Coord C2 exon
chr11:24959023-24959180
Length
19 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCAAAGTTCCTTTTTTATAGGTG
3' ss Score
7.66
Exon sequences
Seq C1 exon
GAACAAGATAACCTTGCAGATGCAGAGGACCGCTGTGATCTGCTCATTAAGACCAAGATCCAACTTGAAGCCAAAGTAAAGGAGATGACCGAACGCCTGGAAGACGAAGAGGAGATGAATGCTACAGTTCTGGCAAAGAAGCGTAAACTGGAAGATGAGTGCGCCGAGCTGAAAAAAGACATCGATGATCTGGAGATAACCTTGGCCAAGGTGGAGAAGGAGAAGCATGCCACTGAAAACAAG
Seq A exon
GTGAAGAATCTGATAGAAG
Seq C2 exon
AGATGGCAGCTTTGGATGAAACTATACTGAAGCTCACCAAAGAGAAAAAAGCCCTACAGGAGAGTCACCAGCAGACCTTGGACGACTTGCAGACAGAGGAAGACAAAGTCAATACTCTGACTAAGGCCAAAGCCAAGTTGGAGCAGCAAGTTGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075-29-34,29-33,29-32-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=NA C2=0.508
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(40.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(29.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGAAGGAGAAGCATGCC
R:
GGTGACTCTCCTGTAGGGCTT
Band lengths:
102-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]