RnoALTA0025285-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151143825-151144922:+
Coord C1 exon
chr3:151143825-151144067
Coord A exon
NA
Coord C2 exon
chr3:151144746-151144922
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
GAAGTTGGGCCTTGACACAGGTG
3' ss Score
2.92
Exon sequences
Seq C1 exon
GAGCAGGACAACCTAGCGGATGCGGAGGAGCGCTGCCACTTGCTCATCAAGTCCAAGGTGCAGCTCGAGGCGAAGGTGAAGGAGCTGAACGAGCGGCTGGAGGATGAGGAGGAAGTGAACGCTGACCTGGCCGCACGCAGGCGCAAGCTGGAGGATGAGTGCACGGAGCTCAAGAAGGACATTGATGACCTGGAGCTGACCCTGGCCAAGGCTGAGAAGGAGAAACAAGCCACCGAGAATAAG
Seq A exon
NA
Seq C2 exon
GTGAAGAACCTGACAGAGGAGATGGCTGCCCTGGACGAGTCCGTGGTCCGCCTGACTAAGGAGAAGAAGGCGTTGCAGGAGGCTCACCAGCAGGCTCTGGGTGACCTGCAGGCTGAAGAGGACCGTGTGAGTGCGCTGGCCAAGGCCAAGATCCGGTTGGAGCAGCAAGTAGAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997-26-28,26-27-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.390
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(34.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGGTGAAGGAGCTGAACG
R:
CTCTACTTGCTGCTCCAACCG
Band lengths:
347-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]