HsaALTA1006802-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:34995336-34996513:+
Coord C1 exon
chr20:34995336-34995578
Coord A exon
NA
Coord C2 exon
chr20:34996346-34996513
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
TGGCCCTGGCCCTGGCACAGGTG
3' ss Score
4.36
Exon sequences
Seq C1 exon
GAGCAGGACAACCTGGCAGATGCCGAGGAGCGCTGCCACTTGCTGATCAAGTCCAAGGTGCAGCTGGAGGGGAAGGTGAAGGAGCTGAGTGAGCGGCTGGAGGATGAGGAGGAGGTGAACGCTGACCTGGCCGCCCGCCGGCGCAAGCTGGAGGACGAGTGCACGGAGCTCAAGAAGGACATTGATGACCTGGAGCTGACACTGGCCAAAGCTGAGAAGGAGAAGCAAGCCACTGAGAACAAG
Seq A exon
NA
Seq C2 exon
GTGAAGAACCTGACGGAAGAGATGGCTGCGCTGGACGAGTCAGTGGCCCGGCTGACCAAGGAGAAGAAGGCGTTGCAGGAGGCCCACCAACAGGCCCTGGGTGACCTGCAGGCCGAGGAGGACCGTGTGAGCGCGCTGACCAAGGCCAAGCTCCGGCTGGAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-38-35,38-34-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.346 A=NA C2=0.627
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(36.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(26.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGCCACTTGCTGATCAA
R:
CTCCTGCAACGCCTTCTTCTC
Band lengths:
294-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains