DreALTA0019301-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000101161 | orc4
Description
origin recognition complex, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2224]
Coordinates
chr6:896045-898407:-
Coord C1 exon
chr6:898321-898407
Coord A exon
NA
Coord C2 exon
chr6:896045-896153
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGC
5' ss Score
8.06
3' ss Seq
CTCGTGTTTGTGTGCTGTAGTTT
3' ss Score
6.62
Exon sequences
Seq C1 exon
AAACTGTGTGAAGATAAATCCGTTCTGGAGGTTTTAAAGAGAAGCTTCAACTCCAGTAAAGATTTCCGCTCTCTGTATTCGCTGCTG
Seq A exon
NA
Seq C2 exon
TTTATGGCTGTGAGTCGTGTGTCCGTCTCTCACTCTACTCTGTGTGAAGCTGATTTTCTTGAGTCCGGCCGCCTGATTTCTGCCGATTCCAAAGCAAACGTCCTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101161-16-16,16-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146291=ORC4_C=FE(14.6=100)
A:
NA
C2:
PF146291=ORC4_C=FE(18.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGCTCTCTGTATTCGCTG
R:
ATGGAGGACGTTTGCTTTGGA
Band lengths:
132-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]