MmuALTA0012564-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026761 | Orc4
Description
origin recognition complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1347043]
Coordinates
chr2:48910186-48912648:-
Coord C1 exon
chr2:48912562-48912648
Coord A exon
chr2:48910243-48910294
Coord C2 exon
chr2:48910186-48910242
Length
52 bp
Sequences
Splice sites
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
3' ss Seq
TAAAATACACCTTTCTTTAGATG
3' ss Score
5.98
Exon sequences
Seq C1 exon
TGTCTCTCTGAAGATTCAACTGTGCTTGAAGTCCTACAGAAACATTTCAGTGTCAACAAAAACTTGCAGTCATTACACATGCTATTG
Seq A exon
ATGCTTGCTTTAAATCGAGTAACCGTATCACACCCATTTATGACTTCAGCAG
Seq C2 exon
ATCTGATGGAGGCACAGCATATGTGTAGCTTGGATTCTAAGGCGAATATTGTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026761-34-40,34-39,34-38-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146291=ORC4_C=FE(14.6=100)
A:
NA
C2:
PF146291=ORC4_C=PD(23.5=70.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCTCTGAAGATTCAACTGTGC
R:
TCGCCTTAGAATCCAAGCTACAC
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types