RnoALTA0027610-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005021 | Orc4
Description
origin recognition complex, subunit 4 [Source:RGD Symbol;Acc:735212]
Coordinates
chr3:33041454-33044284:-
Coord C1 exon
chr3:33044198-33044284
Coord A exon
chr3:33041511-33041562
Coord C2 exon
chr3:33041454-33041510
Length
52 bp
Sequences
Splice sites
5' ss Seq
TTGGTTTGT
5' ss Score
1.94
3' ss Seq
TAAAATACGCCTTTCTTCAGATG
3' ss Score
6.49
Exon sequences
Seq C1 exon
TGTCTCTCCGAAGATTCAACTGTGCTTGAAGTTCTACAGAAGCATTTCAATGTCAACAAAAACTTGCAATCATTACATATGCTATTG
Seq A exon
ATGCTTGCTTTAAATCGAGTAACCGTGACACACCCATTTATGACCTCAGCAG
Seq C2 exon
ATCTGATGGAGGCGCAGCACTTGTGTAGCTTGGATGCCAAAGCGAGTATTGTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005021-20-24,20-23,20-22-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146291=ORC4_C=FE(14.6=100)
A:
NA
C2:
PF146291=ORC4_C=FE(18.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCGAAGATTCAACTGTGCT
R:
TACTCGCTTTGGCATCCAAGC
Band lengths:
132-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]