DreALTA0021690-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000059046 | psmd5
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 [Source:ZFIN;Acc:ZDB-GENE-050417-28]
Coordinates
chr21:5209916-5210231:-
Coord C1 exon
chr21:5210103-5210231
Coord A exon
chr21:5209954-5210025
Coord C2 exon
chr21:5209916-5209953
Length
72 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
TCATATGAACGTGTGTTCAGTTG
3' ss Score
4.52
Exon sequences
Seq C1 exon
GCGATCGCCGCACTTAGTAAACTCAGCAACACGAAGGCGGGGCTTGATGCTTTGTTCCGCTCTGATTTGCTGAACAAGCTGAAGGATGTGATGCTCACCAGTGACATCATCAGATACAGAGTCTATGAG
Seq A exon
TTGATAGTGGAGGTGTCTACAGTTTCTCCAGTGTCTCTGGGCTACTGCGCTAACAGCGGCTTAATCTCACAG
Seq C2 exon
ATGCTGGAGGAGCTGACTGGAGATGATGTGTTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059046-5-4,5-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(8.3=100),PF124633=DUF3689=PU(17.8=60.5)
A:
NA
C2:
PF105084=Proteasom_PSMB=FE(14.0=100),PF060257=DUF913=FE(22.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCGCCGCACTTAGTAAACT
R:
ACACATCATCTCCAGTCAGCTC
Band lengths:
159-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]