MmuALTA0014392-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026869 | Psmd5
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 [Source:MGI Symbol;Acc:MGI:1914248]
Coordinates
chr2:34863476-34865655:-
Coord C1 exon
chr2:34865527-34865655
Coord A exon
chr2:34863536-34863566
Coord C2 exon
chr2:34863476-34863535
Length
31 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTTTTTTTTTTTTCTCTCAGCTA
3' ss Score
9.71
Exon sequences
Seq C1 exon
GCTATTAAATCCCTGTCGAGAATATCACTAACCCAGGCTGGCCTGGAAGCTCTGTTTGAAAGTAACCTGCTGGATGATTTGAAGAATGTAATGAAAACAAACGACGTTGTTCGATACAGGGTCTATGAG
Seq A exon
CTAATTATAGATATTTCTTCTGTGTCATCAG
Seq C2 exon
AATCTTTAAACTACTGTACCACAAGTGGACTGGTGACTCAACTCCTAAAAGAGCTGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026869-9-11,9-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(8.3=100)
A:
NA
C2:
PF105084=Proteasom_PSMB=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGAAGCTCTGTTTGAA
R:
AGTCACCAGTCCACTTGTGGT
Band lengths:
128-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types