RnoALTA0031529-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000018809 | Psmd5
Description
proteasome 26S subunit, non-ATPase 5 [Source:RGD Symbol;Acc:1308434]
Coordinates
chr3:13927528-13928337:-
Coord C1 exon
chr3:13928209-13928337
Coord A exon
chr3:13927607-13927637
Coord C2 exon
chr3:13927528-13927606
Length
31 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGA
5' ss Score
8.65
3' ss Seq
TTGTCTCTCTGTTCTTTCAGCTA
3' ss Score
11.05
Exon sequences
Seq C1 exon
GCTATCAAATCCCTGTCAAGAATATCACTAACCCAAGCTGGACTGGAAGCTCTATTTGAAAGTAATTTGCTGGACGATTTGAAAAATGTCATGAAAACAAATGATGTTGTTCGATACAGGGTGTATGAG
Seq A exon
CTAATTATAGATATTTCTTCTGTGTCATCAG
Seq C2 exon
AATCGTTAAATTACTGTACCACAAGTGGACTGGTGACCCAGCTCCTGAGAGAGCTGACGGGTGAGGACGTGTTAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018809-4-5,4-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF105084=Proteasom_PSMB=FE(12.3=100)
A:
NA
C2:
PF105084=Proteasom_PSMB=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGACTGGAAGCTCTATT
R:
ACCAGTCCACTTGTGGTACAGT
Band lengths:
128-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]