DreALTA0022560-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000014244 | rbmx
Description
RNA binding motif protein, X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
Coordinates
chr14:31521068-31522403:-
Coord C1 exon
chr14:31522316-31522403
Coord A exon
chr14:31521119-31521149
Coord C2 exon
chr14:31521068-31521118
Length
31 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
AGAAATGTATATTTTTGCAGTGG
3' ss Score
3.76
Exon sequences
Seq C1 exon
GTCGAGTAAGTGACTGTGTTGGGCGGGTCGAGACACAGCGGACACATATAAACCAGCACACGCTTTTGTCTTGTCTATTGATTCTGAG
Seq A exon
TGGCATTAACGTTACTGGAAAAAAATGGCAG
Seq C2 exon
AGGCAGACCGACCTGGGAAGCTCTTCATCGGTGGCCTGAACACTGAAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014244-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.324
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=PU(38.0=73.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAGTGACTGTGTTGGGCG
R:
GTTCAGGCCACCGATGAAGAG
Band lengths:
125-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]