MmuALTA0015006-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000031134 | Rbmx
Description
RNA binding motif protein, X chromosome [Source:MGI Symbol;Acc:MGI:1343044]
Coordinates
chrX:57391567-57392981:-
Coord C1 exon
chrX:57392852-57392981
Coord A exon
chrX:57391683-57391701
Coord C2 exon
chrX:57391567-57391682
Length
19 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
3' ss Seq
ATAATAATACCATTTTTCAGCAG
3' ss Score
4.4
Exon sequences
Seq C1 exon
CTCGTTGCGCAGTCGTCCTAGCGTCATTTCTGTTCCGTTCTGAAAATCGGTAGCTGTCACTGGTGCGGCGCTGCTCGGGAGGTCCGGTCGGCGAGCTCAGAGGAGCTTGAGACCGTCGCAGTCCCCTCGG
Seq A exon
CAGACCCCCATCGGTTAAG
Seq C2 exon
AGGAAAAATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTTATTGGTGGGCTTAATACAGAGACGAATGAGAAAGCCCTTGAGGCAGTGTTTGGCAAATATGGACGAATAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031134-0-3,0-2,0-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.207
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=PU(38.0=73.0)
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGGTAGCTGTCACTGGTG
R:
GGGCGATCTGCTTCAACCATT
Band lengths:
113-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types