RnoALTA0033359-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000866 | Rbmx
Description
RNA binding motif protein, X-linked [Source:RGD Symbol;Acc:1565256]
Coordinates
chrX:159889964-159891326:-
Coord C1 exon
chrX:159891215-159891326
Coord A exon
chrX:159890073-159890082
Coord C2 exon
chrX:159889964-159890072
Length
10 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGA
5' ss Score
8.18
3' ss Seq
GTAATAATATAATTTTTCAGCAG
3' ss Score
5.26
Exon sequences
Seq C1 exon
CAGCGTCATTTCTGTATCGTACTGAAAATCGGTAGCTGTCACTGGTGCGGCGCTGCTCAGAAGGCCCCATCGGCGAGCTCAAAGGAGCTTGAGACTGTCGCCATCCCCTCCG
Seq A exon
CAGAGGAAAG
Seq C2 exon
ATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTTATTGGTGGGCTTAATACAGAAACAAATGAGAAAGCCCTGGAGGCAGTGTTTGGCAAATATGGACGAATAGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000866-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.216
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=PU(38.0=73.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTGAGACTGTCGCCATC
R:
CCTCCAGGGCTTTCTCATTTGT
Band lengths:
104-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]