DreALTA0025310-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14731169-14731613:-
Coord C1 exon
chr17:14731469-14731613
Coord A exon
NA
Coord C2 exon
chr17:14731169-14731317
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
CACTGTGCTTTATTCAGCAGAGC
3' ss Score
5.94
Exon sequences
Seq C1 exon
GGTCGTAAGCGATCTGGAACGGACACGTCGAGCAGTGTTTGGCTCAGTACCTCCAGCTCCAAGCTCAACCAAACGTACGGCGTTGAAGCCTGGGCCAGCTGGGTGCGAATGAAAAGAGGCCACGCTGAGCAGGAGCAGCAGGCTC
Seq A exon
NA
Seq C2 exon
AGCCCATGACCATGAAGGAGGATGTGTTGCAGTGCTCGTCTGCAGATCTCAGTTATGGTCTGTGCCGCTTTATCAAGGAGGTTCGCAGGCCGAATGGAGAAGAATATCAACCCGACAGCATCTACTACCTGTGCCTGGGCATTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681-26-38,26-37,26-36-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAAGAGGCCACGCTGAG
R:
AAGCGGCACAGACCATAACTG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]