DreINT0139556 @ danRer10
Intron Retention
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14731169-14731613:-
Coord C1 exon
chr17:14731469-14731613
Coord A exon
chr17:14731318-14731468
Coord C2 exon
chr17:14731169-14731317
Length
151 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
CACTGTGCTTTATTCAGCAGAGC
3' ss Score
5.94
Exon sequences
Seq C1 exon
GGTCGTAAGCGATCTGGAACGGACACGTCGAGCAGTGTTTGGCTCAGTACCTCCAGCTCCAAGCTCAACCAAACGTACGGCGTTGAAGCCTGGGCCAGCTGGGTGCGAATGAAAAGAGGCCACGCTGAGCAGGAGCAGCAGGCTC
Seq A exon
GTAAGTTCACACATATGGGTCAGAACAAGAAGTCGAGACCTCTGCTGTGTGTCATTAGTGAAGGTCACCGTCTCAGCTAGTTTGTGACATTACACTGACCCACCATGTGTCTTAGCAGCTCTCTCTGCACCCACTGTGCTTTATTCAGCAG
Seq C2 exon
AGCCCATGACCATGAAGGAGGATGTGTTGCAGTGCTCGTCTGCAGATCTCAGTTATGGTCTGTGCCGCTTTATCAAGGAGGTTCGCAGGCCGAATGGAGAAGAATATCAACCCGACAGCATCTACTACCTGTGCCTGGGCATTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681:ENSDART00000154690:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.134
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGGCTCAGTACCTCCAGC
R:
GCCCAGGCACAGGTAGTAGAT
Band lengths:
249-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]