MmuINT0180526 @ mm10
Intron Retention
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126877629-126882310:-
Coord C1 exon
chr4:126882215-126882310
Coord A exon
chr4:126877781-126882214
Coord C2 exon
chr4:126877629-126877780
Length
4434 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TGTTTTCTCCCTTTCCACAGCCC
3' ss Score
11.6
Exon sequences
Seq C1 exon
GAGGTGAACTTGCCTCTGCTAGTCCGTGTTCTGACTCCTTAGGAAGTGCTCAAGACCATGCCCTCTCTCAAGAATCCTCAGAGCAAGGCTGTAAAG
Seq A exon
GTAAAAGTTGCTAATATCTCTCTGCTGTAAGTTACGTATAGTATTGGAGTTTAAATTTTTAATGTGTGTGAATATTTTGCCTATATGTGTATATGTGGAATATGTGCATGCCTGGTGCATGCAGAAGCCAGAAGAGGGCATTGGATCCCCTAGAAATGGAGCTACAGGCAGTTATAAACCGTCATGTGGGTGCTGAGACGAAAACCTGGGTCCTCTGGCAGAGCAATCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCTAGTAATATTGTTGATTTAAGTTTGTAAACTGACCAGATGTGGCTAGGTTTGCTAGTCTTGGCACTGCAAAGAAAAGAGAATTAAGAGTTCAGGGTGATTTTTAGCTGCACAATGAGGTCAAGGCTCCCAGAAAGAGGAAGGGTGCTGAATTGAGTTTTAAAATGTAAGATTTAGAGTCTTAAGAGTAATTAATTTCATATCCTCAGTTGTAAAGATGTTACTGTGTTTACAACTGATACCGAGTTTATACAGCATGTATAATTAATTTTCTTTTTAAGCACATAAATAATTCAAAATAATCTAATGTGTATGTATAATAAACTATATTAAACTGTAAGGCTTTTATGATATTTTGGATTTTAAAAAAAAATCAAGAAAAGACTTGCTGCTCCTGTATAAATATTCCCCGCCATTGAGATCCCTATGGCTTTACAAAAATTTTAAGACATATTTTATGTGTATTTGTGTTTTGCCTGCATTTACATATATGTATAACACAGATGCCTGGTGGCTGAAGAGGTCAGAAGAGAAGGTCAGATTCCCCTGGAACTAGAGTTACAGATGCTGTGAGTTACCATGTAGGTGCTGGAAAAGCAAACCCAGGCCCTCTGCAAGAGCAACCGTTCATTGCTCTTATCTTCCTTTTTTTTTTTTAAGATTTTATTATATATATATATGATGAGCATACTGTAGCTGTCTTCAGACGCACCAGAAGAGGGCATCAGATCCCATTACAGGTTGCTGTGAGCCACCATGTGGTTGCTAGGATTTGAACTCAGGACCTCTGGAAGAACAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGTCCCCGCTCTTATCTTCTGAATCATTTCTCTAGCCTCAAGATCCATAATGCCTTTTAATGTTTGTTTCATTTTAGTATCTAGCCAGAGTCAAATAATTCAAATATAGCACTCATGTACTATGACACCTTTTTTTAGACTTCCATAAGTTTCCACTTTTTGTTGATTTGATTTACTGATCTAGACTGTTTTTGTGTTTTGTTTTTATTACTTTGTGTTTTATACCAGTAGAGTCAGAATGGATGAAGTGAGGTTGGTTTGTTTGTTTTTTAATAAAAGAGAGTTTAATTTGGCGCTTGCCATTTTAGAGGGTTAGAGTCCATGAGCATCCCAGCAGACAATATGGAGGCAGGCAGGCATGAGTATTTAGAAAGCCTGTCCCCAGTTACATACCTTGTCCAACAAGGCTGCACCCTCTAATGCTTCCCAACTAGTACCACCAAATAGGGACCAAGCATTCAAATACATAACTTGTAAGGACCATTCTCATTCAAACTACCATATTCCACTTCCTGACCTCTATAGGCTTGTAGCCATATCATAATGCAAAATGCATTCAGTCCAACTTGAAAAGTCTTCATGGTCTTTCAGTCTCAACATTGTTTGAAAGTCTCTTGTGAGACTCAAGACAATATATCAGTTGTAACCTGTAAAATCAAAGCAAATATGTACTTCTAATGTACATTGATACAGAATATTTATTAATGTTTGAAAGGAAGGAATAGGGGCATACTGAGGAAATACTGGACCAAAGCAAGACCAAAACCCAGCACAGCAAACTTTAAATCCTATAGTTCTATGTCTGATGTCAAATGGTTTAGATGGCTCCACCCTTCCAGTTTTGTTGACTACGACACACTTCTCTCTCCTGGGCTGACTTCATTTCCTATCTGTAGCTCTCTAATGGCTCCGGCATCTTGAACATCTGGGGACCTGTCCAGTGCAATCTTGACTTTCCTTTCATAGCTTTACAAAATGGCCTCTCTGGTCCTCCAGTAAGGGACTCCCCCTGCCTCACACCTGACCTAAGTGTCTCTCCTTAGCAGCAGAGGAAGATTGATGTCACAACCTTCACTACTGTATTCTTTATGACTCCAAAGCCAGGGCCACATGAACAACACTGCCAAGTCCTGCTGTTTGCTTGGGATTCGGCTTGACCCCCTTGAATCAAATTTGCATAAGCTTTCATTTGTTGCTGTTTGTTTATATTTTTTGGTTTGGGCTTGAGATTTCCAACTATATATTTTCTCTTACAAGTGGGTGATTATCAGGTTTTGACTTTTATTGCTAGTAGTCTGTTTGCTGGCCTTGGAGTTCACCAGTTCTGATCAGAGCAGGCGGTTGGTACTCTGTTCTGTGATGACTCACAGTCTCTAAATCAAGTGTTAACCTTTGTTCTCCACAGGGTCTGTAAATGCTTTCCTATTGGGAAGTCGTGCCTGTAACCATTTCCCTGTTGTGTAGCTTTCTTCATTGAGAGAACAAAGAGAGCCAGGTGCAATATATCTGTAATTCCTGTATTTTCAGCTGTTTAGAGGCAAAGGAATTAAGATTATTTGAGTTTATAAGTTCAGTACTAGCCTTGACAACTTAGACTCAAACTTAAAAACAAAATGTGGGTGGAAAATGGTAGGAGTGAAAGTGGAGTGGTGGCTGGGCAGTGGGGGCGCACACCTTTAATCACAGCACTTGGGAAGCAGAGAGAGGCAGGCGGATCTCTGAGTTTAACAACAGCCTGGTCTACAGAAAGTTGTAGAGCAGCCAGGGATACATAGAGAAACCCCTATCTCAAAAAAAAAAAAAAAAAAAAAGAGACATAGAGGGGGCGGGTGAATGAACACACACACAGACTAGTAATATTGTTTTAGATTACCAAGTCTTCAGATTGGTAGGCACAGGAGCTAGCTGTTCAGTCATTTCTACTTGTCATTTTTCCACAAAATCTGTAGAATGTGCTATTCACCAGATATCCAGATACGCCGAGTACAGGGACGGTCCCAGGATCCTCCCTTACCTTGTGCAGAGCCAACATAGAAGAATCGCAGGCATATCTTTGGGAAGTGTAAGCCTGTTGGCATGCATGAAAGCAGTGATGGGGGTTCATACTGCATAGCACAGATGAGTGTGTTCCAGTGGGAGCTGTACACACGGGGTAACTCTCCTGCTGGAAATAGAGATTTTCATTTCTTCCCAGTCTTAGTGTAACACATGAAACTCGTGCTTGGCCTGAATTTGTCCATATTTTCTTCCCTTCCCCCAATTTCTTTGAACCAGTTCATTTAATGACCTAGCAACAGCAGTACTGCATTCTAACATTTCTAAGAGCATGATGGTATTCTGTGTTATTTGAAATAATCTTATACTAAGTTCTGAGAAAGAGAAAGTTATGCAGCACTTCCTCAGTGGATCTTCCCAGTGCCTTTAATACAGCAATAGGTCCAGGAGTTCTGGTCTTAGTACAAACCCCGTCCCAGTTTTCTCCAATTCCCATATAGAACTGGATTTCCTATATATGAAGCTGGCCTCAAGGGGGGGGGGTGAGGAGAGACAGAGAGAGAGACAGAGACAGGCAGGCAGAGGCAGAGGAGAGAGAGAAATCTAATAGGGAAGGGTTCAGTTAAAAGAGTCTGAAGGAAGCAACACAGGGCTATACCACAAAGAATGAAGATTTAAAAGGCAGGCAGGTAAAGAATACCAATTTGAAGATGCAAAAGATCTCCAGAGAACATTCAATAACAATTTTCATGGCCTAGGACTGTGCTGCAGCAGGGAGAACATTTGCTCAGTATGTCAGTCTCTGTCTGACTCTTTCTCTCTGGGTCTCTGTCTGTCTCTGCCTCTCTTCACTCTCTCTCTCTCTTCACTATGTAGCCCTGGCTGTCCAGAATTTGCTGTGTACACAAGTCTGGACTCTAACTCAAAAGAGATCTGCCTGCTTCTTCCTCTCATGCTGGAATTAAAAGCACACACCATTGCACCCAACTTCTTTTGTTTACTTTCATAGAGTCCTAGTTAAACAAGACTTGTGCCATACATAGTACCTGTTATACCATATGCAGTAAACCATCTTTATTTGTCTACTGGTAAAACAGGATCTGTTCTTTGATTGGTTTTTTTAATTCGGCACAAGGTTTTTCTTTGTAGCCCAGGCTAGCCTAGACCTCAGAATCCTCCTGCTTCAGCATCTTGAGAACACAGGTTACAGGTGTGCTTTCCTATTTACAGTGTCTTTGTGACCCAATACAGTGTTGGGCACACTAGTGCTTGTGTTGATTCAGTAAATAGTAGTTATACACTGTTTTTTAAAGTTAATGTTTCAGATGTGTTTTCTCCCTTTCCACAG
Seq C2 exon
CCCGCTCTGTGAAACTGAAGGAAGATATTCTGTCCTGCACTTTTTCTGAGTTGAGTTTGGGCTTATGCCAGTTTATCCAAGAGGTGCGGAGACCAAATGGTGAAAAGTATGACCCAGACAGTATCTTATACCTGTGCCTTGGAATTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446:ENSMUST00000106108:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types