GgaINT0137499 @ galGal4
Intron Retention
Description
NA
Coordinates
chr23:4304332-4306062:-
Coord C1 exon
chr23:4305891-4306062
Coord A exon
chr23:4304484-4305890
Coord C2 exon
chr23:4304332-4304483
Length
1407 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
AATCATGTTCTTCACCACAGTTC
3' ss Score
7.09
Exon sequences
Seq C1 exon
GGACGAAAGAAGTCTGTAGTTGCTGTAGAGCCCCGCAATCTGATGCAGGGCTCCTACCCAGGATGCTCTGTTTCTGGGATGACCCTAAAGTATATGTATGGGGTAAATGCCTGGAAGAACTGGGTCCAATGGAAAAATGCACAGGAGGAGCAAGGGGACCTGAAGTTTTCAG
Seq A exon
GTAAACAGAAATAATTGGTTGAATAACTCTCAGTATAATACGTTTTTCAAGACAAAATGAAGTTTTAAAATAGCCATGAGTAGACTAAAGTTTTCAGAGCATCTTGCATTTAAAAATCTCAGCCATTGCATTCTTAATTGATCCATTATCTTTTAAAGCAGGCTCTGAAATACCAGATTTCTTTTCAACACGAAATGTTGGTCTTTTAACCTCACCTATGTGTTCATTTCCTGCACTAATTCTTCATTTCTAGAACAGATGTTTTATGTAGCTGCAAAGTCTTTACTGTGCTGTTACTAGACCACACTTACAAGCTGACTACGCGGGCTTGGCCCTGTCTGTTCATCTGTAGCTCATACATTCACAAAGTATTTGTCAGCATCAGTGTTTGCTGTAAAAAGCTGTGCACCACTGTGTTCTTTCTGAGCGTCACTGCTGGAAACAAACCTTCCAGAAGTGTACCCTTTCTGTGCTGCACTCTGCCTGAAACTACCTTTAAAAGGCATGAATTGTTCCTTGCCTCTCACGGGGGTGATAGATAATAACGACAATATAAATGTCACTTTCGTTTGTTTTTCTAATTATGGATGTTTTTGGGGTTTTAGTTTTGTACAAAAGCACAGCACTCCTGGGGTTTGGCAGTGTCTGACTCCCCTCTTCCCTGGTCTCAAGTCTGTCTTCCATGTTCGCACTGAGTGTTGCATGGGCAAGGTTTCAGAGTGCAGCAGAGAATTTGATTTAGTTCTGTAACTGAGCTTTTTGAGGACAGTGGGGAAGAGAACAAGCAGTATTAAATGCTTCTGTAGTGCATAGATCTAGGTGTGGCAGGGCTTATATAAGGAAGATCCCAAAAGGGAAAATGCTGTTTAGAATAAGCTCTGCTTTCTTCTGTCATTACACAAGAACAGCTGTTTTCTGTTTCCCAGAAGGAGTAATCACATGAGTGACAATGGGCTTTTCTCGTAGCTAAGAAAACAAAGGTTACTAACAGCTCCAGGAAGCAATGTCAGTCCCCACAGAAAGGTTCCCTGTTCGGTCCCAGGCAGTCGCCCCGCAATGTGGAGTGGCCAAGCAGTGATTTCACTGCAGATTCTTCGATCGATTCTCTGCGCTGCTTCGTTTTCTGAATCTCACAGCCCTATAAACTCTTCATTCCTTTTCCCTTTAAGGAGTCGAATACTCTGTGCTCAGCTTGTGCCCAGAACTACTAGGAAATATTCAGGATCTTTTTCTCACTCAAGATTCCCGAGTCCAGCTATGAAGGATTTACTAACCCTGCGTTGCCAGCCTGAGTACACATTACCATTGCTGCACCATATCTTGGACTCAGTGAACTCTCTAATACTTAAATGTAAAGATTTAATCTCTTGAATAAAGATATTTCTTTAATCATGTTCTTCACCACAG
Seq C2 exon
TTCGTCCTGTGAAACTCAAGGAGGACATTCTCTCGTGCACTTTTGCTGAGCTGAGTTTTGGCCTGTGCCAGTTTATTCAAGAGGTGCGGAGACCGAATGGAGAAAAATATGATCCTGACAGCATCTTATATTTGTGCCTTGGAATTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003942:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGAAAGAAGTCTGTAGTTGCT
R:
CTGCTGAATTCCAAGGCACAA
Band lengths:
324-1731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]