GgaINT0137499 @ galGal3
Intron Retention
Description
NA
Coordinates
chr23:4674232-4675662:-
Coord C1 exon
chr23:4675491-4675662
Coord A exon
chr23:4674322-4675490
Coord C2 exon
chr23:4674232-4674321
Length
1169 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TCATTCCTTTTCCCTTTAAGGAG
3' ss Score
9.35
Exon sequences
Seq C1 exon
GGACGAAAGAAGTCTGTAGTTGCTGTAGAGCCCCGCAATCTGATGCAGGGCTCCTACCCAGGATGCTCTGTTTCTGGGATGACCCTAAAGTATATGTATGGGGTAAATGCCTGGAAGAACTGGGTCCAATGGAAAAATGCACAGGAGGAGCAAGGGGACCTGAAGTTTTCAG
Seq A exon
GTAAACAGAAATAATTGGTTGAATAACTCTCAGTATAATACGTTTTTCAAGACAAAATGAAGTTTTAAAATAGCCATGAGTAGACTAAAGTTTTCAGAGCATCTTGCATTTAAAAATCTCAGCCATTGCATTCTTAATTGATCCATTATCTTTTAAAGCAGGCTCTGAAATACCAGATTTCTTTTCAACACGAAATGTTGGTCTTTTAACCTCACCTATGTGTTCATTTCCTGCACTAATTCTTCATTTCTAGAACAGATGTTTTATGTAGCTGCAAAGTCTTTACTGTGCTGTTACTAGACCACACTTACAAGCTGACTACGCGGGCTTGGCCCTGTCTGTTCATCTGTAGCTCATACATTCACAAAGTATTTGTCAGCATCAGTGTTTGCTGTAAAAAGCTGTGCACCACTGTGTTCTTTCTGAGCGTCACTGCTGGAAACAAACCTTCCAGAAGTGTACCCTTTCTGTGCTGCACTCTGCCTGAAACTACCTTTAAAAGGCATGAATTGTTCCTTGCCTCTCACGGGGGTGATAGATAATAACGACAATATAAATGTCACTTTCGTTTGTTTTTCTAATTATGGATGTTTTTGGGGTTTTAGTTTTGTACAAAAGCACAGCACTCCTGGGGTTTGGCAGTGTCTGACTCCCCTCTTCCCTGGTCTCAAGTCTGTCTTCCATGTTCGCACTGAGTGTTGCATGGGCAAGGTTTCAGAGTGCAGCAGAGAATTTGATTTAGTTCTGTAACTGAGCTTTTTGAGGACAGTGGGGAAGAGAACAAGCAGTATTAAATGCTTCTGTAGTGCATAGATCTAGGTGTGGCAGGGCTTATATAAGGAAGATCCCAAAAGGGAAAATGCTGTTTAGAATAAGCTCTGCTTTCTTCTGTCATTACACAAGAACAGCTGTTTTCTGTTTCCCAGAAGGAGTAATCACATGAGTGACAATGGGCTTTTCTCGTAGCTAAGAAAACAAAGGTTACTAACAGCTCCAGGAAGCAATGTCAGTCCCCACAGAAAGGTTCCCTGTTCGGTCCCAGGCAGTCGCCCCGCAATGTGGAGTGGCCAAGCAGTGATTTCACTGCAGATTCTTCGATCGATTCTCTGCGCTGCTTCGTTTTCTGAATCTCACAGCCCTATAAACTCTTCATTCCTTTTCCCTTTAAG
Seq C2 exon
GAGTCGAATACTCTGTGCTCAGCTTGTGCCCAGAACTACTAGGAAATATTCAGGATCTTTTTCTCACTCAAGATTCCCGAGTCCAGCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003937:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGAAAGAAGTCTGTAGTTGCT
R:
ATAGCTGGACTCGGGAATCTTGA
Band lengths:
262-1431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]