RnoINT0169172 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144896345-144896738:-
Coord C1 exon
chr5:144896567-144896738
Coord A exon
chr5:144896441-144896566
Coord C2 exon
chr5:144896345-144896440
Length
126 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
TGTCTTATTTTTCTCATCAGGAG
3' ss Score
9.4
Exon sequences
Seq C1 exon
GGGAGGAAGAAGTCTGTCGTACCTGTGGAGCCCAGGAGTCTTATCCAAGGAGCCCTGCAAGGCTGTTCTGTGTCTGGGATGACACTGAAGTATATGTATGGGGTAAATGCCTGGAAGAACTGGGTTCAATGGAAAAATGCCAAGGATGAACAAGGAGATCTGAAGTGTGGGG
Seq A exon
GTAAGTGCTCACTGTACATTGTGTTCGGATGTGTGGATATAAGAAATGGAATCAAAGATGATTGGACCTTGATTCTACAGAGTCCACTTGATTATTGTTATTTACCTGTCTTATTTTTCTCATCAG
Seq C2 exon
GAGGTGAACATGCCTCTGCTAGTCCCTGTTCTGACTCCTTAGGAAGTGCCCAGGACCAGGCTCTCTCTCAAGAATCCTCAGAGCAAGGCTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.303
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGAGCCCAGGAGTCTTA
R:
ACAGCCTTGCTCTGAGGATTC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]