HsaINT0186038 @ hg38
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger MYM-type containing 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr1:35405023-35405468:+
Coord C1 exon
chr1:35405023-35405194
Coord A exon
chr1:35405195-35405372
Coord C2 exon
chr1:35405373-35405468
Length
178 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TATGTTTCTCTCCTTGTCAGGGG
3' ss Score
8.99
Exon sequences
Seq C1 exon
GGACGGAAGAAGTCTATAGTGGCTGTGGAGCCCAGGAGTCTTATTCAAGGAGCCTTTCAAGGCTGCTCAGTGTCCGGGATGACACTGAAATACATGTATGGGGTAAATGCTTGGAAGAACTGGGTTCAGTGGAAAAATGCCAAGGAAGAGCAGGGGGATCTAAAATGTGGAG
Seq A exon
GTAAGTGCACAGCATGAATTGTATCTTGATTTAGGTAGGGGGAAATATACAGATAATCTACTGAAAAGGGATACATTTTAGGTCAAAAACCCCATAAAACTTTGGTTTGGGCTTTACTTAATTTTTTCCGCACTTTTATTTTATTTAAACTTTTCTTTTATGTTTCTCTCCTTGTCAG
Seq C2 exon
GGGTTGAACAGGCCTCATCTAGCCCACGTTCTGACCCCTTAGGAAGTACTCAAGACCATGCACTCTCTCAAGAATCCTCAGAGCCAGGCTGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463:ENST00000314607:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.737
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGAGCCCAGGAGTCTTA
R:
CTACAGCCTGGCTCTGAGGAT
Band lengths:
244-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains