BtaINT0164781 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110937488-110937939:-
Coord C1 exon
chr3:110937768-110937939
Coord A exon
chr3:110937584-110937767
Coord C2 exon
chr3:110937488-110937583
Length
184 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAAT
5' ss Score
6.76
3' ss Seq
TTACTTTTCTTTTCATGCAGGAG
3' ss Score
10.11
Exon sequences
Seq C1 exon
GGACGGAAGAAGTCTATAGTATCTGTGGAGCCCAGGAGTCTTATTCAAGGAGCCTTTCAAGGGTGCTCAGTGTCTGGGATGACATTGAAATACATGTATGGGGTAAACGCCTGGAGGAACTGGGTTCAGTGGAAAAATGCCAAGGAAGAGCAGGGGGACCTGAAGTGTGGCG
Seq A exon
GTAAATATGTGGCGTGAATTTGTGTCTTGATTTAGGGGTGGGAGGAATACGGATTAATAAATCCATAAACCTACTCAAAGGGGATGAATGCTAGGTCAGAAATCCCATAAAACTTTGATTTTGGTTTGCTTAATTTTTTTTGGATCTTTATTTAAACTTCTCATTTACTTTTCTTTTCATGCAG
Seq C2 exon
GAGTTGAACATGCCTCATCTAGCCCGTGTTCTGACCCATTAGGAAGTACTCAAGAGCATGCACTCTCTCAAGAATCTTCAGAGCCAGGCTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023:ENSBTAT00000027998:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=NA C2=0.394
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCTGTGGAGCCCAGGAGT
R:
ACAGCCTGGCTCTGAAGATTC
Band lengths:
246-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]