DreALTA0025310-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14731169-14731613:-
Coord C1 exon
chr17:14731469-14731613
Coord A exon
chr17:14731318-14731320
Coord C2 exon
chr17:14731169-14731317
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
ACCCACTGTGCTTTATTCAGCAG
3' ss Score
5.36
Exon sequences
Seq C1 exon
GGTCGTAAGCGATCTGGAACGGACACGTCGAGCAGTGTTTGGCTCAGTACCTCCAGCTCCAAGCTCAACCAAACGTACGGCGTTGAAGCCTGGGCCAGCTGGGTGCGAATGAAAAGAGGCCACGCTGAGCAGGAGCAGCAGGCTC
Seq A exon
CAG
Seq C2 exon
AGCCCATGACCATGAAGGAGGATGTGTTGCAGTGCTCGTCTGCAGATCTCAGTTATGGTCTGTGCCGCTTTATCAAGGAGGTTCGCAGGCCGAATGGAGAAGAATATCAACCCGACAGCATCTACTACCTGTGCCTGGGCATTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681-26-38,26-37,26-36-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAAGAGGCCACGCTGAG
R:
AAGCGGCACAGACCATAACTG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]