DreALTA0025895-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000004386 | si:dkey-153k10.9
Description
si:dkey-153k10.9 [Source:ZFIN;Acc:ZDB-GENE-030131-3893]
Coordinates
chr4:9682325-9685103:+
Coord C1 exon
chr4:9682325-9682514
Coord A exon
NA
Coord C2 exon
chr4:9685007-9685103
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
ACTGGTGTCTCCTTTCTCAGGAG
3' ss Score
8.89
Exon sequences
Seq C1 exon
GGGAGGAAGGTGGCAGTGTGCACTGATAACGTCACAGATATGTCCAGCAAGGACCTTCAGAATGAATCCGCTGACCTCAACAATTTTGTCGAGACTTTTGTGTGCCAATCGACCATCATCCCTGCAGATGGACGCGGCTTCAGATCAGCACTGTCATCTCAGTCCATCAGCCTGGCTGACACTTTTCTCG
Seq A exon
NA
Seq C2 exon
GAGCGTCTGTTGAAAGCAGTCTGGATGGGGTCACTGTAAACTCAGACCTCTTCCTCAAGTCTTCGCAGAAAGTTCCAGATATCAACTTCTTCTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004386-17-21,17-20,17-19-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACCATCATCCCTGCAGAT
R:
GACCCCATCCAGACTGCTTTC
Band lengths:
114-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]