RnoALTA0032476-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000005818 | RGD1563349
Description
similar to RIKEN cDNA 9330182L06 [Source:RGD Symbol;Acc:1563349]
Coordinates
chr4:21600996-21602286:-
Coord C1 exon
chr4:21602100-21602286
Coord A exon
NA
Coord C2 exon
chr4:21600996-21601092
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TGTTTTCCAATGTCATCTAGGAG
3' ss Score
7.42
Exon sequences
Seq C1 exon
GGGAGAAAGATGGCTCTCTGCACCAACAATATTTCAGATTTTACAGTAAAGGAGATGGTGACAGGGTCAGATGATTTGAATTTGGTTGGAGCATTTGTGTGCCAGTCAACTATTATTCCTTCAGAAAGTAAGGGCTTCCGGGCAGCCCTGTCATCCCAGTCGATCATTCTGGCAGATACATTTTTAG
Seq A exon
NA
Seq C2 exon
GAGTCACAGTGGAAGCTTCCTTGCAAAACGTTAATATCAAGGAGGATATGTTCCCAGTGTCACCCAGCCAAGTTCCAGATGTGCATTTCTTCTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005818-25-29,25-28-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTCGATCATTCTGGCAG
R:
TGCACATCTGGAACTTGGCTG
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]