HsaALTA1041565-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000164659 | KIAA1324L
Description
KIAA1324 like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr7:86908447-86910001:-
Coord C1 exon
chr7:86909812-86910001
Coord A exon
NA
Coord C2 exon
chr7:86908447-86908543
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TCTTTTTAAATGTCATCTAGGAG
3' ss Score
7.44
Exon sequences
Seq C1 exon
GGGAAGAAGATGGCTCTCTGTACCAACAATATAACAGACTTTACAGTAAAAGAAATAGTGGCAGGGTCAGATGATTACACAAATTTGGTAGGGGCATTTGTATGCCAGTCAACAATTATTCCTTCTGAAAGTAAGGGTTTCCGAGCAGCCTTATCATCACAATCCATCATTCTGGCAGATACATTCATAG
Seq A exon
NA
Seq C2 exon
GAGTCACAGTTGAAACCACATTGAAAAATATTAATATAAAAGAAGATATGTTCCCAGTTCCAACAAGCCAAATACCAGATGTGCATTTCTTTTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164659-39-42,39-41-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAGCCTTATCATCACAA
R:
GGCTTGTTGGAACTGGGAACA
Band lengths:
118-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains