DreALTA0027218-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000104278 | slc2a8
Description
solute carrier family 2 (facilitated glucose transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-030829-25]
Coordinates
chr5:65297263-65300033:+
Coord C1 exon
chr5:65297263-65297362
Coord A exon
NA
Coord C2 exon
chr5:65299854-65300033
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
ATCCTTTCTTCTTTTTTTAGGTT
3' ss Score
12.39
Exon sequences
Seq C1 exon
CTTTACATCTCTGAAATGGCTCATGAGCGTGTTAGAGGAACTTTGGGATCCTGTGTGCAACTAATGGTTGTGATAGGCATTATGGGTGCTTATGTAACAG
Seq A exon
NA
Seq C2 exon
GTTTGTTCCTGGACTGGCGATGGTTAGCAGTGGCATCATCTATTCCTCCCACACTCATGCTGCTGTCCATGTGCTTCATGCCGGAGACGCCACGATTTCTGCTCTGCCAAGGGAAACGGCGGGAAGCAGAGGACGCCCTGCGCTTCCTTAGGGGTCCTGATGCCCCCGCCGAGTGGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104278-3-5,3-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(7.3=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCATGAGCGTGTTAGAGGA
R:
ATCGCCAGTCCAGGAACAAAC
Band lengths:
103-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]