HsaALTA1028148-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000136856 | SLC2A8
Description
solute carrier family 2 member 8 [Source:HGNC Symbol;Acc:HGNC:13812]
Coordinates
chr9:127399907-127402753:+
Coord C1 exon
chr9:127399907-127400006
Coord A exon
NA
Coord C2 exon
chr9:127402557-127402753
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
CCTCCACCCACCCCCCGCAGGCT
3' ss Score
9.7
Exon sequences
Seq C1 exon
GTCTACATCTCCGAAATCGCCTACCCAGCAGTCCGGGGGTTGCTCGGCTCCTGTGTGCAGCTAATGGTCGTCGTCGGCATCCTCCTGGCCTACCTGGCAG
Seq A exon
NA
Seq C2 exon
GCTGGGTGCTGGAGTGGCGCTGGCTGGCTGTGCTGGGCTGCGTGCCCCCCTCCCTCATGCTGCTTCTCATGTGCTTCATGCCCGAGACCCCGCGCTTCCTGCTGACTCAGCACAGGCGCCAGGAGGCCATGGCCGCCCTGCGGTTCCTGTGGGGCTCCGAGCAGGGCTGGGAAGACCCCCCCATCGGGGCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136856-6-11,6-10,6-9-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(33.3=100),PF100274=DUF2269=PU(40.2=97.1)
A:
NA
C2:
PF0008319=Sugar_tr=PD(59.2=87.9),PF100274=DUF2269=PD(59.0=69.7),PF0008319=Sugar_tr=PU(3.5=7.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCGAAATCGCCTACCCA
R:
CTCGGAGCCCCACAGGAA
Band lengths:
255-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains