GgaALTA1029510-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000853 | SLC2A8
Description
solute carrier family 2, facilitated glucose transporter member 8 [Source:RefSeq peptide;Acc:NP_989706]
Coordinates
chr17:10389912-10390351:+
Coord C1 exon
chr17:10389912-10390011
Coord A exon
NA
Coord C2 exon
chr17:10390168-10390351
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
TTTTCCTTTTTGTTGTGCAGGAT
3' ss Score
10.55
Exon sequences
Seq C1 exon
GTATATATATCGGAAATATCTCATACAGATGTTCGTGGTATGCTTGGCTCTTTTGTCCAGTTGATGGTGGTGACTGGCATACTTGGAGCCTACATTGCAG
Seq A exon
NA
Seq C2 exon
GATTGACACTAAAATGGCACTGGCTGGCAGTATTATGTTCTTTTCCACCATGCGTAATGCTTTTGTTTATGTTGTTCATGCCTGAAACACCGAGATTTCTGCTGGATCAGAAGAAACGTGCAGAAGCTATAGCTGCTTTACAGTTTCTGCGAGGACCATACGTGGACCATGAATGGGAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000853-4-13,4-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(7.3=100)
A:
NA
C2:
PF0008319=Sugar_tr=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTGGCATACTTGGAGCC
R:
TCGGTGTTTCAGGCATGAACA
Band lengths:
124-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]