DreALTA0029149-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11832749-11838242:-
Coord C1 exon
chr6:11837635-11838242
Coord A exon
chr6:11832855-11832857
Coord C2 exon
chr6:11832749-11832854
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
TCATTGATGTCTATGTGCAGAAG
3' ss Score
6.14
Exon sequences
Seq C1 exon
AGCCCCGACATCATCAGCAACATTGCCATCAATGGCAAAGCCGACCCAGCAAACATCTCCAAACTCAGCTCCCACCTGATCGCCCGCAGCCAAGGCTCGTATCTTTATTTAAAACTAACCCTGGACCTCTTTGAGAAGGGTCACCTGGTCATTAAAAGCTCCAGCTATAAGGTGATACCTGTGTCTCTGTCTGAGCTCTACCTGCTGCAGTGCAACATGAAATTCCCATCAGCCTCAGCGTTTGAGCGGGTGCTGCCGCTGCTGAATGTGGCGCTGGCGTCTTTGCATCCTCTGACGGACGAGCAGCTCTTCCGGGCGCTCAACGCAGGCTTCATGACTGGAGAACTGGAGTGGGAGGATTTCCAGCAGCGCATGGACGCTCTTTCCTGCTTTTTGATCAGCCGTCGAGACAAAACGCGCATGTTCTGCCACCCGTCCTTTCGGGAGTGGCTGGTCTGGAGGGCGGATGGAGAAAGCACTGACTTCCTGTGCGACCCAAG
Seq A exon
AAG
Seq C2 exon
TGGCCACGCTCTGATGGCCTTCATGCTTTCTCGTCAAGAGGGAAAACTCAACCGTCAACAAACCATGGAGCTTGGCCACCACATCCTCAAGGCTCACATATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073-19-20,19-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCTGTGCGACCCAAG
R:
AGCTCCATGGTTTGTTGACGG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]