RnoALTA0039730-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45871777-45879741:+
Coord C1 exon
chr3:45871777-45872384
Coord A exon
chr3:45879633-45879672
Coord C2 exon
chr3:45879673-45879741
Length
40 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
CTTTGTATTTCTTGTCCTAGGAA
3' ss Score
9.52
Exon sequences
Seq C1 exon
AGTCAGGACATCCTCAGCAACATCTCCCTGAACGGCAAGGCCGACGCCGCCCTCATCGGCAAAGTCAGCAGCCACCTGGTGCTGCGGAGCCTTGGCTCCTACCTGTACCTCAAGCTCACGCTGGACCTCTTCCAGCGGGGCCACCTGGTCATAAAGAGCGCCAGCTACAAGGTGGTGCCTGTGTCTCTGTCTGAGCTCTATTTGCTGCAGTGCAACATGAAGTTCATGACCCAGTCTGCCTTCGACCGAGCCCTTCCCATTTTGAACGTGGCCCTCGCGTCCCTCCACCCCATGACGGATGAGCAGATATTCCAGGCGATCAACGCCGGCCACATCCAAGGCGAGCAGGGCTGGGAGGACTTTCAGCAGAGGATGGAGGCCCTCTCTTGCTTCCTCATTAAGAGGAGAGACAAAACCCGGATGTTCTGCCACCCGTCCTTCAGAGAGTGGCTGGTGTGGAGAGCGGATGGCGAAAGCACAGCCTTCCTGTGTGAGCCCAG
Seq A exon
GAATGGACACGCTCTACTGGCGTTCATGTTTTCTCGACAG
Seq C2 exon
GAAAGCAAGCTGAACCGCCAGCAGACCGTGGAGCTTGGCCACCACATCCTGAAGGCACACATTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-51-26,51-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAACCCGGATGTTCTGCCA
R:
CTTCAGGATGTGGTGGCCAAG
Band lengths:
144-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]