MmuALTA1027045-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59799571-59806384:+
Coord C1 exon
chr2:59799571-59800178
Coord A exon
chr2:59806276-59806315
Coord C2 exon
chr2:59806316-59806384
Length
40 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTTTGTGTTTCTTGTCCTAGGAA
3' ss Score
10.84
Exon sequences
Seq C1 exon
AGCCAGGACATCCTCAGCAACATCTCCCTGAATGGCAAGGCCGACGCCGCCCTCATCAGCAAAGTCAGCAGCCATCTGGTGCTGCGGAGCCTCGGTTCCTACCTGTACCTCAAGCTCACGCTGGACCTCTTCCAGCGGGGCCACCTGGTCATAAAGAGTGCCAGCTACAAGGTGGTGCCTGTGTCTCTGTCCGAGCTCTATCTGCTGCAGTGTAACATGAAGTTCATGACCCAGTCTGCCTTTGACCGGGCCCTTCCCATTTTGAACGTGGCTCTTGCGTCCCTCCACCCCATGACGGATGAGCAGATATTTCAGGCTATCAACGCCGGCCACATCCAAGGCGAGCAGGGCTGGGAGGACTTCCAGCAGAGGATGGAGGCCCTCTCTTGCTTCCTCATTAAGAGGAGGGACAAAACCCGCATGTTCTGCCACCCGTCCTTCAGAGAGTGGCTGGTGTGGAGAGCGGATGGCGAAAGCACAGCCTTCCTGTGTGAGCCCAG
Seq A exon
GAACGGACACGCTCTACTGGCGTTCATGTTCTCTCGACAG
Seq C2 exon
GAGAGCAAGCTGAACCGCCAGCAGACCATGGAGCTTGGCCACCACATCCTGAAGGCACACATTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-72-48,72-47-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAAAACCCGCATGTTCT
R:
CTTCAGGATGTGGTGGCCAAG
Band lengths:
148-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types