DreALTA0029457-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000059558 | tecta
Description
tectorin alpha [Source:ZFIN;Acc:ZDB-GENE-110411-120]
Coordinates
chr5:62503387-62504824:-
Coord C1 exon
chr5:62504544-62504824
Coord A exon
NA
Coord C2 exon
chr5:62503387-62503491
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGG
5' ss Score
4.86
3' ss Seq
ACTGGACCTGTCTTTAGCAGAAT
3' ss Score
5.06
Exon sequences
Seq C1 exon
CTGTGATGAGACCCAGTATGTTGCCCTGGCTCAATCCTGTGATAATACAGCAGTATCAGAGCTCCAGGGGGAGGACAACTGCCTGAAGCTTACCGATTTGAAAGGTTTCTTCCAGCCCTGCCACGGTCTGCTGGACCCTCATCCTTTTTACCAGTCATGCTACATGGACGGCTGCTACAACCACCGCAAGGCCCAGGTGTGCGGCTCTATGGCGGCCTACGCTGAGGCCTGCCGCTCTTTCGGCACTCTCACCACCAAGTGGATCACCCAGGAGAACTGCT
Seq A exon
NA
Seq C2 exon
AATGGATCTATGACCCCTGTGCAGGAGAGATCTGCTCTAACAACACATGTGAGCAGGAGAACGGAGAACTTTGTGGCTGCCCTGAACTTCCCAACAATGACATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059558-20-19,20-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=78.9)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCACCCAGGAGAACTGCT
R:
TTCAGGGCAGCCACAAAGTTC
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]