GgaALTA1032043-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3533904-3534377:-
Coord C1 exon
chr24:3534097-3534377
Coord A exon
NA
Coord C2 exon
chr24:3533904-3534011
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
CGTCTCGCGCTGTTTAGCAGGAG
3' ss Score
3.79
Exon sequences
Seq C1 exon
CTGCAACGAGCTGCAGTACTCCCAGTACGCCGCGTCCTGCGACAACGTCCAGATCCAGAAGCTGCAGAGTGACAGCTACTGCCTGAAGCTGACAGACATGAAGGGCTTCTTCCAGCCCTGCTACGGCCTCCTGGACCCTCTGCCCTTCTATGAGTCCTGCTTCCTGGACGGCTGCTACAACCGCAAGCAGGTGCAGCTGTGTGGCTCACTGGCCGCCTATGGTGAGGCGTGCCGTACTTTTGGCATCCTGGGCACCGAGTGGATTGAGAAGGAGAATTGCT
Seq A exon
NA
Seq C2 exon
GAGTGGTGGAGGACCCCTGTGCAGGCGCCGACTGCCCCAACCGGACCTGCGAGCTGGATGATGGCGGGGAGCTGTGTGGCTGCATTGAGCCCCCACCCTATGGCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614-17-18,17-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=78.9)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCGAGTGGATTGAGAAGG
R:
CATCATCCAGCTCGCAGGTC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]