HsaALTA0008555-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr11:121162075-121165383:+
Coord C1 exon
chr11:121162075-121162370
Coord A exon
NA
Coord C2 exon
chr11:121165276-121165383
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGA
5' ss Score
4.19
3' ss Seq
TGTGTTTTTCTTTTTAGCAGGAG
3' ss Score
7.97
Exon sequences
Seq C1 exon
ACCTCTTGCCCCCAGCTGCAACGAGCTGCAGTTCTCACAGTATGCAGCCATGTGTGACAATGTGCACATCCAGAAGATGCAGGGTGATGGCTACTGCCTGAAGCTCACCGACATGAAGGGCTTCTTCCAGCCCTGCTATGGGCTTCTCGATCCCCTCCCATTCTACGAGTCCTGCTACCTGGACGGCTGCTACAGCCACAAGAAGTTCCAGCTGTGCGGCTCCCTGGCCGCCTACGGGGAGGCCTGCCGCTCCTTCGGGATCCTTAGCACCGAGTGGATTGAGAAGGAGAATTGCT
Seq A exon
NA
Seq C2 exon
GAGTGGTTGAAGATCCCTGTGTGGGGGCGGACTGTCCCAACCGAACTTGCGAGCTGGGCAATGGCAGGGAGCTGTGTGGCTGCATCGAGCCACCCCCCTATGGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927-26-31,26-30-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=75.0)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCGGGATCCTTAGCACC
R:
CAAGTTCGGTTGGGACAGTCC
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development