DreALTA0030696-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000005679 | trip10a
Description
thyroid hormone receptor interactor 10a [Source:ZFIN;Acc:ZDB-GENE-041114-105]
Coordinates
chr3:54183963-54185780:-
Coord C1 exon
chr3:54185692-54185780
Coord A exon
NA
Coord C2 exon
chr3:54183963-54184087
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GGTTCCTGTACACTCTTCAGTCC
3' ss Score
3.07
Exon sequences
Seq C1 exon
TCGTGGCTGGCAGAAGCAGGAGGACGAGGAGACTCAATACGATACTCCACTCACTCGATCAACAACAATGGAGCTCACAACCCCAACAG
Seq A exon
NA
Seq C2 exon
TCCTGGAGCTCTGTCAGATGAAACGGACCCATCGCAGGCCATCTACACCGAGTTTGATGACGAATTTGAGGAAGAAGAGCTCGCCACACCTATCGGTCAATGCACAGCTCTCTACAACTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005679-19-23,19-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.788
Domain overlap (PFAM):
C1:
PF127952=MscS_porin=PD(23.7=73.3)
A:
NA
C2:
PF0001823=SH3_1=PU(14.6=13.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGAGCTCACAACCCCAAC
R:
ATAGGTGTGGCGAGCTCTTCT
Band lengths:
116-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]