HsaALTA1022357-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000125733 | TRIP10
Description
thyroid hormone receptor interactor 10 [Source:HGNC Symbol;Acc:HGNC:12304]
Coordinates
chr19:6750292-6750633:+
Coord C1 exon
chr19:6750292-6750431
Coord A exon
chr19:6750512-6750519
Coord C2 exon
chr19:6750520-6750633
Length
8 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GCCGAATTATCCCCAAACAGCTC
3' ss Score
4.36
Exon sequences
Seq C1 exon
GCGTGGCTGGCAGAAGCTGAAAGTCGAGTCCTTAGCAACCGGGGAGACAGCCTGAGCCGGCACGCCCGGCCTCCCGACCCCCCCGCTAGCGCCCCGCCAGACAGCAGCAGCAACAGCGCATCACAGGACACCAAGGAGAG
Seq A exon
CTCTGAAG
Seq C2 exon
AGCCTCCCTCAGAAGAGAGCCAGGACACCCCCATTTACACGGAGTTTGATGAGGATTTCGAGGAGGAACCCACATCCCCCATAGGTCACTGTGTGGCCATCTACCACTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125733-31-34,31-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.856 A=NA C2=0.893
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PD(10.7=19.1)
A:
NA
C2:
PF0001823=SH3_1=PU(14.6=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACAGGACACCAAGGAG
R:
CTATGGGGGATGTGGGTTCCT
Band lengths:
107-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains