RnoALTA0042221-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000055524 | Trip10
Description
thyroid hormone receptor interactor 10 [Source:RGD Symbol;Acc:621145]
Coordinates
chr9:9690140-9690752:-
Coord C1 exon
chr9:9690604-9690752
Coord A exon
chr9:9690254-9690258
Coord C2 exon
chr9:9690140-9690253
Length
5 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TCTTTTCTGTCTTCACACAGCTC
3' ss Score
10.18
Exon sequences
Seq C1 exon
GCTTGGTTGGCAGAAGCTGAAAGCCGGGTCCTCAGTAACCGAGGGGACAGCCTAAGCCGTCACACTAGGCCTCCTGATCCCCCAACTACTGCCCCACCTGATAGTAGCAGTAGCAGCAACAACAGTGGATCCCAGGATAATAAGGAGAG
Seq A exon
CTCAG
Seq C2 exon
AAGAGCCCCCTTCAGAAGAAGGCCAGGACACCCCCATCTACACTGAGTTCGATGAGGACTTTGAAGAACCTGCATCCCCCATCGGCCAGTGTGTGGCTATCTACCATTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055524-23-23,23-22-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.951
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PD(10.7=18.0)
A:
NA
C2:
PF0001823=SH3_1=PU(14.6=17.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCACCTGATAGTAGCAG
R:
AGTGTAGATGGGGGTGTCCTG
Band lengths:
104-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]