DreALTA0031785-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000044718 | vav2
Description
vav 2 guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-091204-420]
Coordinates
chr21:17992905-17994621:-
Coord C1 exon
chr21:17994534-17994621
Coord A exon
chr21:17993026-17993028
Coord C2 exon
chr21:17992905-17993025
Length
3 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
ACTTTTGATACGTGTAACAGGAG
3' ss Score
4.18
Exon sequences
Seq C1 exon
GTTTAATGATGAAGTGAAGCACATTAAAGTTATTGAGAAAGACAACTGGATTCACATCACAGAGGCCAAGAAGTTTGAAAGCCTCTTG
Seq A exon
GAG
Seq C2 exon
CTTGTGGAGTATTATCAGAGTCATTCACTGAAGGAGAGTTTTAAGCTGTTGGACACAACATTACGGTACCCTTACAAATCCCGGGAACGCTCAAGCTCTCGCACCAATACCCGCTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044718-28-32,28-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.238
Domain overlap (PFAM):
C1:
PF0001719=SH2=FE(38.7=100)
A:
NA
C2:
PF0001719=SH2=PD(6.7=11.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCAAGAAGTTTGAAAGCCT
R:
GGGTACCGTAATGTTGTGTCCA
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]