GgaALTA1034843-2/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002699 | VAV2
Description
guanine nucleotide exchange factor VAV2 [Source:RefSeq peptide;Acc:NP_989473]
Coordinates
chr17:7053837-7054136:-
Coord C1 exon
chr17:7054049-7054136
Coord A exon
chr17:7053958-7053960
Coord C2 exon
chr17:7053837-7053957
Length
3 bp
Sequences
Splice sites
5' ss Seq
TTGGTACGT
5' ss Score
8.11
3' ss Seq
TGTCCCCCCGTGCTTTGCAGGAG
3' ss Score
10.69
Exon sequences
Seq C1 exon
GTTCAACGAAGAAGTGAAGCACATCAAGGTGGTGGAGAAGGACAACTGGATCCACATCACGGAAGCCAAGAAGTTTGAAAGCTTGTTG
Seq A exon
GAG
Seq C2 exon
TTGGTGGAGTACTACCAGAACCATTCGCTGAAGGAGAGCTTCAAGCAGCTGGACACGACGCTCAAGTACCCGTACAAGTCACGGGAACGCTCTACCTCCAGGACCTTCACCCGCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002699-48-46,48-45,48-44-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=FE(38.7=100)
A:
NA
C2:
PF0001719=SH2=PD(6.7=11.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATCACGGAAGCCAAGAA
R:
GTACTTGAGCGTCGTGTCCAG
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]