RnoALTA0044095-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5817458-5818663:-
Coord C1 exon
chr3:5818576-5818663
Coord A exon
chr3:5817546-5817581
Coord C2 exon
chr3:5817458-5817545
Length
36 bp
Sequences
Splice sites
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
3' ss Seq
TGAGTGTACGCCCCCTGCAGGAG
3' ss Score
6.44
Exon sequences
Seq C1 exon
GTTCAATGATGAAGTGAAACACATCAAGGTGGTGGAAAAAGACAGCTGGATCCACATCACGGAAGCTAAGAAGTTTGAGAGCCTCCTG
Seq A exon
GAGCTGGTGGAGTACTACCAGTGCCACTCACTTAAG
Seq C2 exon
GAGAGCTTCAAGCAGTTAGACACTACACTCAAGTTCCCCTACAAGTCTCGGGAGCGCGCCGCCACCAGGGCCTCAAGCCGATCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422-38-40,38-39,38-38-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=FE(38.7=100)
A:
NA
C2:
PF0001719=SH2=PD(6.7=11.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGAAAAAGACAGCTGGA
R:
CCCGAGACTTGTAGGGGAACT
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]