DreALTA0032579-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000039263 | zbtb48
Description
zinc finger and BTB domain containing 48 [Source:ZFIN;Acc:ZDB-GENE-030131-4450]
Coordinates
chr23:25022515-25024145:-
Coord C1 exon
chr23:25023844-25024145
Coord A exon
chr23:25022624-25022626
Coord C2 exon
chr23:25022515-25022623
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TATGTCTTCCGGTCTGCAAGGAG
3' ss Score
3.71
Exon sequences
Seq C1 exon
GTGGATATATCTGTTGATGACCAAAATGATGACGATGATGATGTTGAGGATGCTGCCAATAATGACGATGACAGTGACAGAGGTGGAAGTGTGGATATTATTATTGAGGGAACTGATGAAGAGTATGTGCCTCATGATTCACCTTGCTCAAGCACAAAGACTCCACGGGGAAAACGAAAAGAGAAAAGTAGCAATAAAAAGAATGGGGAAGGAACGTCAAAAGACAGCAAGAAAGGGGCCGTCCAGTGTCCAACGTGTCACAAAACGTTTCTCAGCAAATATTACCTCAAAGTACACAACAG
Seq A exon
GAG
Seq C2 exon
ACACACTGGAGAAAAGCCGTTTAAATGTGGCAAATGTGGGAAGTGCTACTTTAGAAAGGAAAACCTGCTGGAGCACGAAGCCAGAAACTGTCTGACCAGAACAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039263-5-3,5-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041477=Nop14=FE(50.3=100),PF134651=zf-H2C2_2=PU(24.0=5.9)
A:
NA
C2:
PF041477=Nop14=PD(1.5=7.9),PF134651=zf-H2C2_2=PD(72.0=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGACAGCAAGAAAGGGGCC
R:
AACGGCTTTTCTCCAGTGTGT
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]