GgaALTA1035875-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000637 | ZBTB48
Description
zinc finger and BTB domain-containing protein 48 [Source:RefSeq peptide;Acc:NP_001038107]
Coordinates
chr21:574532-576557:-
Coord C1 exon
chr21:575813-576557
Coord A exon
chr21:574587-574643
Coord C2 exon
chr21:574532-574586
Length
57 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
CTGCGTTTGTGTCTCCCCAGGAA
3' ss Score
11.48
Exon sequences
Seq C1 exon
ACCTTCCAGCTGCTGCTCGACTTCTTTTACACCGGGCGCCTGGCGCTGACGGCGCACAACCGCGCCCGCCTGCTCGCCGCCGCCGAGCTGCTGGGTGTGCCGGACGCCGTGGCTCTGTGCCGCGCATTCCGCCCCGCCACCGCCCGGCAGCGCCCCCGCCGCGCCCCCGGCCCCGCGTTGCACCCCGCCGAGCCGCCCGAGGTCCTCAGTCCGGCGGTGCCGGAGAGGGAGCGCCAAGCGGGGCGGCCCGGCCCGGAAAGCGCAGTGATCGTGCCCGTTCCCCCGCCCGTGAGCTCTCCCCCGGCGGCGACGGGCGGCGGCGGGACCGCGGTCAGCGACGCGGAGCCCCTCCCGGAGAAGAAGGCGCTGCGCAGTAAAGGGAAGCCCCCCGCCGGCGGCGCGGGGGCGGCAGGGAGCAAGAAAGGCGCAGCGGTGCCCGTGGAGTGCCCCACGTGTCATAAAAGCTTCCTCAGCAAATACTACCTTAAAGTGCACAACAG
Seq A exon
GAAACACACTGGAGAGAAGCCATTTGAATGCTCTAAATGTGGTAAATGTTATTTTAG
Seq C2 exon
AAAAGAGAATCTCCTGGAGCACGAAGCCAGAAATTGCATGAGCCGAACTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000637-2-1,2-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=43.1),PF134651=zf-H2C2_2=PU(24.0=2.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(72.0=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCAAGAAAGGCGCAG
R:
GCTCAGTTCGGCTCATGCAAT
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]