BtaALTA0033560-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47663992-47667123:-
Coord C1 exon
chr16:47666882-47667123
Coord A exon
NA
Coord C2 exon
chr16:47663992-47664103
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
CCCTTGGCTTCTCCCAGCAGGAA
3' ss Score
9.23
Exon sequences
Seq C1 exon
TGGGAGGTGGTGGTTCAAGTTGAGGACGACGGGGATGGCGATTATGATTCTGAAACTGAGACTGTGCCAACCAAGAGGAAAGCAAACGTAATCAGAAAGCCTTGTGCTGCTGAGCCGGCCCGGAGCGTAGGTTCCCTGGCAGCCGAGCCTGCTGAGAACAGAAAAGGTACAGCGGTGCCAGTTGAATGCCCCACATGTCATAAAAAGTTCCTCAGCAAATATTACCTAAAAGTCCACAACAG
Seq A exon
NA
Seq C2 exon
GAAACACACTGGGGAGAAACCCTTTGAGTGTGCCAAATGTGGGAAGTGTTACTTCCGGAAGGAGAACCTCCTGGAGCATGAAGCCCGGAACTGCATGAACCGCTCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735-4-4,4-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(24.0=7.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(72.0=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTGAATGCCCCACATGT
R:
TGGCACACTCAAAGGGTTTCT
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development