BtaINT0163647 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47663992-47667123:-
Coord C1 exon
chr16:47666882-47667123
Coord A exon
chr16:47664104-47666881
Coord C2 exon
chr16:47663992-47664103
Length
2778 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
CCCTTGGCTTCTCCCAGCAGGAA
3' ss Score
9.23
Exon sequences
Seq C1 exon
TGGGAGGTGGTGGTTCAAGTTGAGGACGACGGGGATGGCGATTATGATTCTGAAACTGAGACTGTGCCAACCAAGAGGAAAGCAAACGTAATCAGAAAGCCTTGTGCTGCTGAGCCGGCCCGGAGCGTAGGTTCCCTGGCAGCCGAGCCTGCTGAGAACAGAAAAGGTACAGCGGTGCCAGTTGAATGCCCCACATGTCATAAAAAGTTCCTCAGCAAATATTACCTAAAAGTCCACAACAG
Seq A exon
GTAAACGTTCTGTTTTTCTACTTTGTTTTCCCATCTGCTGTTCCTGTGTTGGGGGAGGGGGCCCGCGCTCCCCACTTGCGGCCCACGTAGGGGGGCTGGGGTGCCATCTCAGACCCACACGGTGCCTGGCATTGGTATCCTCTGACCATTGGGGAGTGAGACTCTGACACTGGATGGCTTCCTTCTTCCTCCCACTCCTGTGAGCTCTCTGCTGGGAGCGGGTTTGGGGACACCCAGGTGGCGTTAGTGGTAAAGAACCCGCCTGCCAATGTAGGAGACATAAGAGACAGAAGATTGCCTGGAGAAGGGCATGGCAACCCACTCCAGTATTATTGCCTGGAGAATTCCATGGACAGAGGAACCTGGCTGGCCACAGTCCATGGGGTCGCAGAGTCTAGCAGGATTGAAGCGGCCTGAAGCAGCTGTTACATCAGGCTCCACCCACTGTGGACCTTGACCTCCAGCAGGCTTCTCCCAAGGAGGTGAGAGCAGCCTGAGGGCCCATGCTGTGGCTGAGGCCTGACCGCAGGTATTACTGAAGCCTGGCAGCGTGGGCCTGGGGCCAGGATGTCCATCTGTAGGGTGGGTGCTACCTGCGTTTCTGCAGACAGGTTAAGTCTCAGGTGTCAGCGGAGCACTAGGGACCCTTTGTCGAAAGCTGCTGTGTCCGGTAAGGTGTTGACTTAAAAAATAATCACAACCTAAAAGTTGAGAGTTATGTTTTATTCAGTGGGAATTTTTAGGACTTCAAGCCCAGGAGGCAGCAGCATCTCAAGTAACCCTGAGAGAACTGCTCTGAGGAAGCGAAGGGAGGAGCCAGGTTATATAGAAATTTTTGCAACCAAGGGTATATAGTCTGAACATCAAAAGATTATTGTTAAAGAAAACCAGATATCCCAAGTTAAGGAATTTTGCCACTTTTCTGTGTATGGGAAGATGTAAGCTTCTGGGCTCACTGAACTCCTTGGATATGCACCTCAGCTATCTGGGACAAGTATCCTGTGTTTTTCCACATCTTGAGTGTTCTTGGGGCTCACCTCAGGAAGTGGCTGCATTTTGGTGGCCGCAGGTAGCAGGTATTCTTCTCCTGAGTTCCCTTAGGGCTCACTGGCTCTCCTTGGAGGGCTACAATGACTGGTGCCTGTGACATCCAGATTCCACAGGAAGCTATTTTAACTTAAAAGTAATTAAAATTAAATAAGTTTAGTTCCTAAGTCATGCTAGCTTCATTTCAAGCGCTCAGTAGCTACTTGCAGCCCTAGCAGCTGAACGAAGGCCACAGCATGGACGTGGAGTATTGGAGTATTTCTATCATCCCGTACATCCTTGTGGAAGGCACTGCTCCCGAGGCCTTGCTTTTCCTAGGGCTTGCAGGGGGGCAGCTAGGTGATGCGCCTTCCCTCCCTGCCCCTCTTCAGCCCCAGACAGCACTTGGTGCAATGTCTTGCCAAGCCAGGCGGGGCCATGCACGTTTTCTCACTACGACACTCTCAGAGGCTCTTGTGACTGAATGGAGTTGGAACTGAGGACAGAGGCCCCTTGCTCTCCCTGCTTTGGGGGCAGCTGCTGCCAGTGGAGCCTTTGGGCCAGTCACCCTGGGGTGACCTGTATATGCCTGCACACTCCCTAGTGTGAAACTTGGGTGCAGGTACCAGCCCTGTCCTCCTCTTATGCTGCAGGCCACTAGACTGACCTAAGAACTAGGAGGGGGTGCCAGCTGAGTGCCAACTGAGGCCTTGTGGGTGCGGGACAGTCAGTGTATCAGCAGGGATGAGAGAAGAGTGCCTGTGGCAGGCTGTCAGTGTTCTTCCCACACTATTCCGGGCTCTGAGGTCAGGGTTCACTTAGTTCATTCAGTGAGTTGTCTGCCAGGTGGCTGGGCGCTTCAGATACCTTCATGAAGAGAACAAAGGGACCTTGTGGAGCTTGCCTTCCAGCAGGGCGGTGAGACCCTGAACGACCAGATAAGAGACTCTGCAGTGTGCTGAAGGGCTAGAAGTGCCATGGGAAAAAAGAAAAGGATAGGAGGGCTGGGGAGGGGGACCTGGGGAGTTCAGGGTTGGGTCAGGTTGCAATTGTAGACAGGAGACTACCCAGCAGGTTCAGAAGAAGTGAGAAAGCTTGCAGATGGCTGGGGAGCAGCTCTGGGCTGGAGGGAAGCTGGAACAGAGGCTCGGGTGGGAGGGAGGCAGCAAGGTAAGGGGCAGCAACAGGCCTTTCTCGGGGCCAGATGCCAAGTGTTAGAGGGTTGAGTAAGGTGATGAGATCTGGTTATCCTCGAGGGTCCATCCGACTCCTAAAGTGAAAACTTGTTGGGAGGCCTGCATGGAGCACAGGACCAGGTGGGAGGCCCAGGCAGTGGCCTGGAGGTGGCGCGGCTGCACTGGGTGGTAGCCCGGAGGCCAGGCCGAGGTGGTCAGATTGTGGCCATGGTTTTGAAGGCCAAGCTCACAGAAGCCCCAGGCAGGCTGAGAGGTTTCTCCAGGGAGTTGGGGCCCAGAGGTTATTTCTGCCTTTGGAGAGACACTGCAGCTGGCCCTCCCAGTGGCCTGTGGTTCGGGGGTGTCCCCTACAGCGGGAAGCTGTCCCCTCCTTTGCGGAGTCTCCTGGAGGGAGGAGGGTTTCTGGACGCACCTCACAGCTTCACCAGCCATGTGGAGAGCCTCAGGCGTCAGCGCGGGCAGCTCAGCACTGTCAGCAGAGGTGCCAGAGCGGGCCCTGTGTGAGGGAGGGCGGCGAGTCTACTCAGTCTCCACACCCCTTGGCTTCTCCCAGCAG
Seq C2 exon
GAAACACACTGGGGAGAAACCCTTTGAGTGTGCCAAATGTGGGAAGTGTTACTTCCGGAAGGAGAACCTCCTGGAGCATGAAGCCCGGAACTGCATGAACCGCTCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735:ENSBTAT00000022249:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(24.0=7.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(72.0=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development