DreINT0177295 @ danRer10
Intron Retention
Gene
ENSDARG00000039263 | zbtb48
Description
zinc finger and BTB domain containing 48 [Source:ZFIN;Acc:ZDB-GENE-030131-4450]
Coordinates
chr23:25022515-25024145:-
Coord C1 exon
chr23:25023844-25024145
Coord A exon
chr23:25022627-25023843
Coord C2 exon
chr23:25022515-25022626
Length
1217 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TATGTCTTCCGGTCTGCAAGGAG
3' ss Score
3.71
Exon sequences
Seq C1 exon
GTGGATATATCTGTTGATGACCAAAATGATGACGATGATGATGTTGAGGATGCTGCCAATAATGACGATGACAGTGACAGAGGTGGAAGTGTGGATATTATTATTGAGGGAACTGATGAAGAGTATGTGCCTCATGATTCACCTTGCTCAAGCACAAAGACTCCACGGGGAAAACGAAAAGAGAAAAGTAGCAATAAAAAGAATGGGGAAGGAACGTCAAAAGACAGCAAGAAAGGGGCCGTCCAGTGTCCAACGTGTCACAAAACGTTTCTCAGCAAATATTACCTCAAAGTACACAACAG
Seq A exon
GTACATCCCTTTGTGATAAGAAGTATTGGTTTTATGCAAATTGACCTATATTTGTTTTTAGTGCTTATTAACATTTAAGTGTGACTGAGTAAAAATAAAATTCAGTATTTACACAATAAATACAATACATACAAATGCATGTACATACTTTAAAAATCTCTACATATATTTTTATGTTTATATAGCTTTTTTGGTATGTAAATCTACAAAAATATTTTTTTTTTATATGTATATACATATATACAATGGATGTGTGTATTTATACACTACCTGACAAAAGTCTTGTCGCCTATCTAAGTTTTAGGAACAACAAGTAATAACTTGACCTTTTGTTAATCATTTGGTATCAGAAGTGGCTTATATGAAAGGTAACGGCCTCTAGATTATTCTTATTTTACTACATTAAATTCCTTAATTTTTAATTATTTAATTAGGACAGTAAGGTCTTAACAGCTTTAAGCACCTCACTTAACACTTAACAGCACCTCACTTACCACACCGAAGACGACGATAAACAAGAAAACAAGTTGGCTTGACAATACAGTATAGCGTTATACAGTTTATTACTCTTACAATGTTACCAATAATGCTTCATGTGTTGTAAGTCAAGCATAACGTTTACTTAGCCACCGCCATTATTGATGGTTGCAATTAGAATGAAATAAAAGCAAAAACTATTGGGAGGGGAAGAGCTACTCTATGTCCCACCTTCTCTTCATTTTTCAGTTGAGATTACATCAAACATGGAATAAATATGTACATTTCAAAGCACTCCACGGGACCTTTAATATAGTTTTGAGATTTTTTTTTACTTTATAACGTCGTCTGGTATTACTGTATAAAGTTATACAGTTTATTACTCTTACAATGTTGTGTTTGTATGTCTACGTGTCTTACATCTTATGTTGTAAACGTCAGTCATGGATAACATGCATTTAGCCACTGCCAAAAGTCAGAGATTGGAGTTTTATACATTGGAGACATTAAAGTCATACATTCTTTGTTAACAGACTTTCACTGTCAAATGTTCAAAGCAGACTCTAATACAGACTTTTTTGGATTTATGCAAAAAACTAAACAAACTTTACTGAAATCTGCTTGATTTCACATGGAGTGACTCTATGAAGGCCTTTGAGGTTTTGTTATTGTAACTGTGGTTTGTAATGCAAATGTCTGACCTGAAATTCTGCCTTTCCTTATGTCTTCCGGTCTGCAAG
Seq C2 exon
GAGACACACTGGAGAAAAGCCGTTTAAATGTGGCAAATGTGGGAAGTGCTACTTTAGAAAGGAAAACCTGCTGGAGCACGAAGCCAGAAACTGTCTGACCAGAACAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039263:ENSDART00000144903:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041477=Nop14=FE(50.3=100),PF134651=zf-H2C2_2=PU(24.0=5.9)
A:
NA
C2:
PF041477=Nop14=PD(1.5=7.9),PF134651=zf-H2C2_2=PD(72.0=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTTGAGGATGCTGCCAA
R:
ACAGTTTCTGGCTTCGTGCTC
Band lengths:
358-1575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]