HsaINT0184670 @ hg19
Intron Retention
Gene
ENSG00000204859 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:4930]
Coordinates
chr1:6642118-6646090:+
Coord C1 exon
chr1:6642118-6642359
Coord A exon
chr1:6642360-6645978
Coord C2 exon
chr1:6645979-6646090
Length
3619 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
CCTGTGGCTTCTCCTGGCAGGAA
3' ss Score
10
Exon sequences
Seq C1 exon
TGGGAAGTGGTGGTTCAAGTGGAGGATGATGGGGATGGCGATTACATGTCTGAGCCTGAGGCTGTGCTGACCAGGAGGAAGTCAAATGTAATCCGAAAGCCCTGTGCAGCTGAGCCAGCCCTGAGCGCGGGCTCCCTAGCAGCTGAGCCTGCTGAGAACAGAAAAGGTACAGCGGTGCCGGTCGAATGCCCCACATGTCATAAAAAGTTCCTCAGCAAATATTATCTAAAAGTCCACAACAG
Seq A exon
GTAAACGTTCTGTTTTTCTATTTTCTTTTCCTGTCTGCCATTCCCACGTTGGGGGAGGGGTCCTGCACTTCCCACTTCTGGGTGAGGTAGGGGCTGGGGGATCCATCTCAGACCCACATAGTGTCTGGCCTTGGTACACCTCTGATAATCAGGAAGTGAGAGCCTGCTTTGGGTTGGATTCTTCTTCCTTGCTGTCCTGTGAGTACTCTGGTTGGAGATGGGTTTGTGTACATCTTGTCAACAGGTTCCACCCACTGTGGACCTTGACCTCCAGCTGGTCTCTGCTAACAGAATGAGAAACCTGTGGCCCCTGTGCTAGAGCTGGGGCCCAACCTTAGGTGTTTCTGAAGCCTGGCAGTGTGGGCTTGAAGCCTGGCAGTGTGGGCTTTGGGCCACAGTGCCAAGCCTTGGTTCAGTGCTACCTGCGTTTCCAGGGAAGTGTTCACTCTGGGGTGTCAGTGGGGCATTCAAGTCTATTTGTCTAAACCTTCAGCGTCCAATAAAGTAACCAGGAACTCCAGGAGCTATTACAATTTTTATTTTTACATTTAATGGAGACAAGGTTTTGCTCTGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAATCGATCCACCCACCCTGGCCTCCCAAAGTGCTGGAATTATAGGTGTGAGCCACCATGCCCAGCCCCCAGGGGCTATTTTATGTTTTTTGTTTGTTTTTGTTTTTGAGTTGGAGTCTTGCTCTGTCACCAGGCTAGAGTGCAGTAGCGTGATCTCAGCTCAGTGCAACCTCTGCCTCCTGGGTTCAAGTGATTCCTCTGCTTCAGCCTCCCAAATAGCTGGGATTACAGGCACATGCCACCACACCCGGCTAATTTTTTGTATTTTAGTAGAGACGGGGTTTCACCATGATGGCCATGATGGTCTCAATCTCCTGACCTTGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCATGCTCAGCCTATGTTGTTTTTCATTTTATTTTATTTTTTTGAGACGGAGTCTCACTCTGTTGCCAGGCTGGAGTGCAGTGGCATGAGATCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGGATTACAGGTGCCTGCCACCACGCCTGGCTAATATTTGTATTTTTAGTAGAGATGGGGCTTCACTATCTTGGCCAGGCTGGTCTTGAACTCCTGACCTTGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGACTACAGGCATGAGCCACTGCGCCCAGCCTGTTATTTTTTTTTTTTTTTTTGAGACAGTCTCACTGTGTCGCCCAGGTTGGAGTGCAGTGGCATGATCTTGGCTCACTGCAACTTCTGTCTCCCAGGTTTAAGCGATTCTCCTGCCTCAGCCTCCTCAGTAGCTGGGACTACAGGTGCGCACCACTACGCCCAGCTAATTGTTTTACTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCCTCTGTCGCCCAGGCTGGAGTGTGGTGGCTCCGTCTAAGCTCACTACAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACGCGCCACCACACCTGGCTAATTTTTTTGTGTGTGTTTAGTAGAGACAGGGTTTCAGCATGTTGGTCAGGCTGGTTTCGAACTCCTGACCTTGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCCAGCCATTTTTTTACTTTTTAGTAGTGATGGGTTTCACCATATTGGCCAGGCTGATCTCAAACTCCTGACCTTGCGATCCACCTGCCTTAGCTTCCCAAAGTGCTGGGATTACAGGCGAGAGCCACCGTGCCCAGCCCCCAGGGACTATTTTAACTTAAAATTTAAAATTAAATAAAAATTCAGTTCCTCAGATACGTTAGCCAAATCTGAAGTGGTGAGGAACCACGTGTCTCCTGGTGGCTGAATCGGGCAGTGCTGACATAGCACATTTCCATCATCGTGGAGAATCCCCTTGGGCGGCACTGCTTTGGAGTCCCTGCAAGGCCTGTGGGGATGGCGGCCCAGTGGCATGCCTTCCAGTCCTGCCACTCCCAGCCAAGACATCACTAGTCTATCATGGTGTGTTTTCTTGCCATGCCAGGTTGGGCGGCACACTAGTAATCACCTAGAATGGGAGCCAGGGGGAAACCCGTTCGCTGTCCCTGTGCACCGTGTTCAGGGCAGCTGCTGCCAGTGGAATGCTGGGATAACCCCAGTGTCGGGGGTCCTGGGGCAGCCTGTGTACTGCTGGATGCTTGCTTTCAAGTACTCTGCTGGGGTAAGACTCTGGGGCAGTTTCCATCCCTTCCTTGGGCTTCAGCTTGCTGGACTGGCCCTGAGAACTGGGAGGGGATGGCTTCATGAAGTCATTTTGATGGGGGATGAAGATAGTTGCTGTAGAGGAAGAGGATGAGAGAGCTGCTTGGCCTCTGGAAGGTGGGAGGAGCTGTCGCAGGCTGCACAGGGGCTCTGAGGTCGAGTTCGTTTAGTTCATTGATTAAGCAGTCTACCAGGTGGCCAGCAAGGCTTTGTGGGTGCTTGGGATGCATTTAAGGGAACTAAACAAAGGTGCTTGTGCAGCCGACCTGCTTGCCAGGCAATGCAGATAACAGATAAGTCCATCTGCCTGCAGTAGACGGTGAGGAAGTGCTGCCGAAGAAGAAAAAGCAGAGGCGGGCCAAGGGGTTGGGGAGTTGTGAGTGGGGTTCGATTGCGATTTTAAGTAGCCAGGGTCTCTAGAGTCTTACTGAGAAGGTGAGATTTAAGCAAAGACTCAAAGGAGGTGAGGAAGTTGACCAAGTGGGTGACTGGGGAGCATCTGGGCAGAGAGAAGAGCCAGGGCGCTGGGGTAGGAGGATCCTGGGGGCGTGACAGGCAGCAAGGAGGCACATGCCTGATCCAGGTGGCCAGACGACACCCTGGGAGAGAAGCAGGCAAGGGGAGGGCTGCCTGCGCCTTGATAGGCCTCCCGGGCCCTTTCTCTGAATGGGGAAGCACTGGGGATACGTGAGCCAAGAGGTACTGAGGTCTGACTTAAAGGTCCTTCTGGCTCCTGAACTGAAACCTGTGGGGGAGGCAGTCACGGAGCGGGGAGACCAGATGGGCAGCTCCCCTGGCTACCTGGGAGAAGCTGTTGCCAGCCTTGGTGGGCCAGTGGAGTCAGGTGAGGATCTGGCCATGGGTTTGAAGCTCTGGGAAGACTGAGTTGCTTCTCCAATAGTCAGGACCCAAGATCTGTTTCTGCCTTCAGACAGAATGCGGTCAGCTGGGCCTCCCTGTCGGCCTCTGTGCTGGCCAGATCCATGGCAGCCTCTTAGGACCTGTGTGAGCTTCTTGCCACTGCACTCTCCCTTGCAGAGTCTCCATGCTGGGGGAGGCTTCTGGGCTTGTCCCTGCACCTTAACCAGCCGGTGTCACCTGAGAACACTTGTTCCCCTTAGAAGGGACCCAGAGGGGGCCCTGGGTGAGGGAGAGATGGGAAACCCTCTCAGCCCCCCCACCCCTGTGGCTTCTCCTGGCAG
Seq C2 exon
GAAACATACTGGGGAGAAACCCTTTGAGTGTCCCAAATGTGGGAAGTGTTACTTTCGGAAGGAGAACCTCCTGGAGCATGAAGCCCGGAATTGCATGAACCGCTCGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204859-ZBTB48:NM_005341:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.552 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(24.0=7.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(72.0=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)