RnoINT0167020 @ rn6
Intron Retention
Gene
ENSRNOG00000009595 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:RGD Symbol;Acc:1311581]
Coordinates
chr5:169194778-169198493:-
Coord C1 exon
chr5:169198246-169198493
Coord A exon
chr5:169194890-169198245
Coord C2 exon
chr5:169194778-169194889
Length
3356 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GTGGCCTCTCTTCCTGGCAGGAA
3' ss Score
9.3
Exon sequences
Seq C1 exon
TGGGAAGTGGTGGTTCAAGTTGAGGACGACAGGGATGGTGATGGCGATTATGCATCTGAGCCTGAGACTGTGCTGACCAGGAGGAAGTCAAAAGTGATTAGAAAGCCGTGTGCGGCAGAGCCAGCCCTGGGTGCAGGCTCCCTCACAGCCGAGCCCACCGAGGGCAGAAAAGGTGCAGCAGTTCCGGTCGAATGTCCCACATGTCATAAGAAGTTCCTCAGCAAATACTACCTAAAAGTCCACAACAG
Seq A exon
GTAAATGCTCTGTTTCTCTCTATTTTCTTTCCCTATCCGCCCCTCCACGTTGTGGGAAGGGGCCCTGTACTCCCCTGCTCTGGGCTCTGTGGTGCTGGGGGTTCTATGTCAGGCCCTAATAGTGCCTGGTCACCTGCCCCCTCTTCCTGTCTTCCTGTGAATTATGGGTTTGTGGACACCCGGTCAGTAGATTCTACCCATTGTGGAGTTTGACTGACCATGGGCAGGCCTCTGCCCACATGAAGCATGAGACAAGCCTCTGGCCCCTTCCCAAGCTGGAGCTGAGGTCTGATAGGCAGTGTAGGCTGTGACAAGAGGCTGATCTTAAGGAAGGTCGGAGGCTGCCTGTGTCTCTGAGAGTGCTAGCTCTGCGTGTCAGTTATGTATGAGGGGCCATTTGTCTAGCTCTGTGTGTCAGTTATGTATGAGGGACCGTTTGTCTAGCAGGGACCCTGGAGGGCTTGGAGGTTTGTTCCTCTCGTTAGCTTTGTAGGGCTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTCTTTTTTTTTGGAGCTGGGGACCAAACCCAGGGCCTTGCGCTTGCTAGGCAAGCACTCTACCACTGAGCTAAATTCCCAACCCCCTTTGTAGGGCTTTTAATATGTTTGCTTGTTTGTTTTTTGAGACCAGGTTTCTCTGTGTAACCCTGGCTGTCCTGGAACACTCTGTAGACCAGGGTGGCCTCAAAATCACGGAGATCAGCCTGCCTTTGCCTCCGGAGCTGGGATCAAAGGTTGTGCCACTACCACCTGCCTCCTCTCCACTTCTTTTTCCAAGTTGACTTGGAACTTACTGTGTAGACCAAGCTGGCCTAGAACTTAGAGATCTACCTGTATCTGCCTCCTGAGTGCTGCTATTAAAGATGTGCACCACCATACCTAGTCTTAGGACTGTTTCAAAACAACAAAGTCCCCTATCCCAGGCAGGGTCTCTCTGTATAGCTCTGGCTGTCCTGTGATCTTCATTGTGTAAACCAGGCTGGTCTCTAATTCAGAGATCCTCCTTCATCTGTCTCCCAAGTGCCAGGATAAAAGTCATTGCCACCATACCTCACTTATTTTGAGTTCAGATTACTTGAGATCCAGTGTCACAGGCCAGGCCTGGTGGTGCACACCTTTTATCTCAGCACTTAGGAGGCAGAGGTAGGTAGATCTCTGAGTTTGAGGCCAGCCTGGTCTGCAGCCTGTAGTCCAGGACAGCCAGGAATACACAGAGAAATCTTGTCTTGAAAACAAGTGCTCTCCACACATCGAAAATGAGTGATACAGACACAGGCCTGTCTCAGCTGCTCAGTAGCCATGTGGTTCTACCAGTCGGCTGCAGTTGCCTCTGTACCAAGCCAGGCTGTGTCGTCAGTGTGTCACTCTGTCAAGCCACTAGTGCTCACCTGGTATAGGAGTGAGGCCTGTTTGTCATGCCTAGGGTTTGGCCTTTGGGTAGATGAGGCTATACATGTCTGCCCATGCTATATTCTTCCTTCCTTGGTCTGTGGTTTGCTGATGCCCCTGAGAACTGAGAAGGAATGGCTTCAAGAGATTTTTGTATCTAGGTATGTTGGCATTTGTCTGATCCCAGTACTTGGAAAACAGAGGCAGGAGAATTGCTGCAAGTTTGAGTTTGGGTAGTGAGTCTCAGGTCAGCCAGGACTATATAGGGAGACCACCATGTCTCAAAAGAAAAGAGAAACTGAAGTTCTTGCAGTGTCAGGGACTACAGGGACGAGGATACTTGCAGTGAAGAGGATGGGAGTAGGTTTGGCTTCTGGACATACAGGAGACTCCATGCTACCCATGGTGCGGAGGTCAGGGCTTGTGTAGTTTATTCAGCAAGCTGCTAGGTTTGGGACAAGATGATGTAGCCCTCAGATGCAGCACAGATACAGACAGTCTTGCAGGAGAGGAACAGTGCTTTAGAATGAAGCAGACAGCCTGAGCCTGCGCTGTTGGACTCTTTGGGAGTTCCAGGCCAGTTGGGGCTGCAGTATGTGACTCCCGGTTTTGAGAGGAGGAGAGAAGAGCCCAGGAATTGGTAATTGGAGCCCGTTGTATAACTAGGGTTAGTTTCCAATAACTGTGGCCTGGGGGGTGGGGGTGGGGCAGAGGGATCATAAGCTCAAAGAGACCCCCTGCCCTCCTGTGACCTTCAGGGTCTCTGCCCCTGAGCTACATCCAGGCCTTACTAAATTATCCAGGCTGGCTTTGAGCTTCTGATCCTTCTGCCTCAGTTTGTAGCAGCTGGGAATGCGCTGGGGATATAGCTCAGTCTTAATCTGCTTGCCTAATACGTGAGACCCTGGGTTCACTCCCCAAAGTGCCAGGAGAAAAAAAATTAAGATTCAGACAAAGTAGTTGAGATGACATCACAAGCCTCTGCCACCCATCTAGGCTAGCAGATGAGACTTGAAGAGGTGTGGAAGCCGTTCGCTGTGGAGAGCCTTCTGGCTGGGAACAGGCTAGCAGTAATGCCCCTGGGAGTAAGCCTGCCTGTTGAGCGGTTAGGGCCTAACCTGGCATTGGGCATTTGGCAACTGGTTACCCATGTCCTCTGCCCCCTGGGCTCTCTTAGTATTAAATAGGAACCACTGGAGGGTTGTGAGCCAAGAGGTAAAGAGGGCCGCCTTTTCTGCAAAGACTTCTGGACTTAATAGAGCCTCCTGGAGAGATAGTAGGGAGCCAGGAACCAGTGCTGACTCACGGACCTTATGAACTGCTACAGCCACACTTGCTGGTACCAGTGAGAAGAGGTGGGCAGAATCTGGTCGTGGAGTTTCACATTTACTTACTTCTTTGACGGGGGTGGGGGACCACGTGTAGACATGAGAGTACAGCTTGTGGGAGTTTTGTTTTTTTCCACCATATGTGTCTTAGGAATTGAACTTGAGTCCAGAAAAGTGCTTCTGTCCATTGAGCCATATCACCTGTCCTGAGCCATATCACCTGTCCTCTGCCATGATGTTGAAGATGGGGCCCTCAGAGGATGTCAACTAGCTTGTGTCAGTAAAGTTTTGAGGTAGCCATTTAGGGAGGCAGGCAGAAGTAGGCCTGGCCTCTCCTGGCTCCTGGCTCTCTCCAGCATGGGGCCATTTGGACCTGTGGCCACTGTTTCTTTCTTCTTCGAGGATCTCTAAGCTGGAGGGGGTTTGTAGCCTTCTCTTACATTACCGACCTGGGGCTCACTAAGCCTACATGGTTAACTCCAGCTAGTCTCAGGATGGTTCTTCCTCCTGGGCAGCACAGTTTGTCTGGAGCAGGAGCTGGAGAGGTCCTGAGTACCAGAGAGCTGGGAAACCCTCTTAGCCCCCACGCCTCTGTGGCCTCTCTTCCTGGCAG
Seq C2 exon
GAAACACACTGGGGAGAAACCCTTCGAGTGTCCCAAATGTGGGAAGTGTTACTTTCGCAAGGAGAACCTCTTGGAGCATGAAGCCCGGAATTGCATGAACCGCTCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009595:ENSRNOT00000012745:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.578 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(24.0=7.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(72.0=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]