GgaINT0134596 @ galGal4
Intron Retention
Gene
ENSGALG00000000637 | ZBTB48
Description
zinc finger and BTB domain-containing protein 48 [Source:RefSeq peptide;Acc:NP_001038107]
Coordinates
chr21:574532-576557:-
Coord C1 exon
chr21:575813-576557
Coord A exon
chr21:574644-575812
Coord C2 exon
chr21:574532-574643
Length
1169 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
CTGCGTTTGTGTCTCCCCAGGAA
3' ss Score
11.48
Exon sequences
Seq C1 exon
GCGGTGCTGCTCCCGGTAGCGTTGCGGCCATGGCGGGCGCGGCGGCGGCAGCGCACAGTGTGCGCGTGCTGCGGGAGCTGAACCGGCAGCGCGCGGCCGGGCAGTACTGCGACGCGACGCTGGGCGTGGGCGGGCGCGAGTTCCGCGCGCATTGGCCGGTGCTCGCCAGCTGCTCCCGCTTCTTCCGCTCTCGCGGCGGCGGCGGCGGCGCGGGTCCGGTGGCGCTGCCCGAGGGCCTGGCCGACACCTTCCAGCTGCTGCTCGACTTCTTTTACACCGGGCGCCTGGCGCTGACGGCGCACAACCGCGCCCGCCTGCTCGCCGCCGCCGAGCTGCTGGGTGTGCCGGACGCCGTGGCTCTGTGCCGCGCATTCCGCCCCGCCACCGCCCGGCAGCGCCCCCGCCGCGCCCCCGGCCCCGCGTTGCACCCCGCCGAGCCGCCCGAGGTCCTCAGTCCGGCGGTGCCGGAGAGGGAGCGCCAAGCGGGGCGGCCCGGCCCGGAAAGCGCAGTGATCGTGCCCGTTCCCCCGCCCGTGAGCTCTCCCCCGGCGGCGACGGGCGGCGGCGGGACCGCGGTCAGCGACGCGGAGCCCCTCCCGGAGAAGAAGGCGCTGCGCAGTAAAGGGAAGCCCCCCGCCGGCGGCGCGGGGGCGGCAGGGAGCAAGAAAGGCGCAGCGGTGCCCGTGGAGTGCCCCACGTGTCATAAAAGCTTCCTCAGCAAATACTACCTTAAAGTGCACAACAG
Seq A exon
GTAACGCTCTGAGCTTTATTCCGTTCCTTGCAAGCAGGGGATCCCGGCGGGGCGGGGGCTGAGTAGAGGCTCACCAGTGCAGGGCGCTCTGCTCGGTGCTGCTGAGGGATGGGTGGCTGTCCCCACGACAACTTGGGGCCCTCGACTCCCCCAGGCAGCGTGGGATGCATTACTGTGCCCCACCCAAAGCTGTGCTGGGAGCTGTGTGGCCCCAGGCCTGGCTGGGATGTGGCTCTGCACCACTGCTGCATGCAGGTGGGACTCACGGCTTCTTGAGGTGCTGCTGGGAGCTGTAGCTCTGCGAGCATCAGCCAACACAGCTCACAAAGAAGGGCGAAGGTGCTCAGGAGCCCTTACGGGAGACACAGTGGCTGCAGGGGGATGGCAGGGAAGGTAGAAAGAGCTGCCAACTCCTTTGACTTTGGCGACAGCAGTGCATCGAGCTGTCAGCTCGTAGGCTTCCAGAACGGGCAGGGGTTGTGTAGCTGTTACAATCAGAAAGATTAACGTGATGGAAGGGCAATGCAGGAATGTAGCAACAAAGGGACCGGCACAGACAGGAGGGTATTTTACAGGAAAAGTAAAGATGTTCACCCACCTCTGAAGAGCTCAGCTCACAGAAAGGACACCACAAGGGAGGAATCTTCCCTAGTGGCACCCAGCCCTTAAATGAGGTCTAAGAGGTGCAGCCAGGCTCCACCCCTTCTGATCACACAGCTGAATTGCCTTCACCTGTGCTCCCAGGGCTGACTGGGTCTTTTCCCGGGTGCTCAATCAGAGGTTCAAGCTGTGACTCAACAGTTCCCATACAGTAGCTCACACTTGCAACAAGCAGGGTGATGGAGTGTGCTCTGGGAATGTGGAGGTGCTTGTGGACACCCTGGGCTCAGCAGAAGTGTGTTAAAAGGAGGCTTTAAACGGTGCCTTCCAGCTTCTTCAGCAGCTGTTGCACACACCAGAGCAGAGGCAGCCGGTGAGGCCTCAGGCTGCTGGCAGCAGAGGCAACAAATGGGGCTCTTGCGTCCTCCTTTCAAAGCACAAGTGCTGGGGCACGCAGATTAGTGAGCATTTGTTGGTCTTCTTTGTGGACACTTCCCAGTGTGGGCAGGGGAGCTCAGCGCTGCTGTTACGCTGCCAGTAACGGGTGCTCTGCGTTTGTGTCTCCCCAG
Seq C2 exon
GAAACACACTGGAGAGAAGCCATTTGAATGCTCTAAATGTGGTAAATGTTATTTTAGAAAAGAGAATCTCCTGGAGCACGAAGCCAGAAATTGCATGAGCCGAACTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000637:ENSGALT00000000909:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.414 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=43.1),PF134651=zf-H2C2_2=PU(24.0=2.5)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(72.0=47.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAAGCGCAGTGATCGT
R:
TGCAATTTCTGGCTTCGTGCT
Band lengths:
342-1511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]