DreALTD0001272-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000062687 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr6:10299325-10305048:+
Coord C1 exon
chr6:10299325-10299520
Coord A exon
chr6:10299521-10299750
Coord C2 exon
chr6:10304649-10305048
Length
230 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TCTTCTCACCCTCTCTTTAGACC
3' ss Score
10.63
Exon sequences
Seq C1 exon
GTGTTGTCGCTAGGCGCCGATGTGCTTCCCGAGTATAAACTTCAGACGCCCCGCATCAACAAGCTGACCATCTTGCACTACAGCCCCTTTAAGGCGGTCTGGGATTGGCTGATCCTGCTGCTGGTCATCTACACTGCCATTTTCACTCCCTACAGCGCGGCCTTCCTGCTCAATGACCCGGAGGAGGAGAAGAGGC
Seq A exon
GTGAGTGCGGTTATTCCTGCAGTCCCCTCAATGTGGTGGACCTCATAGTGGACATTATGTTTATCGTAGACATTCTTATCAATTTCCGGACTACGTACATCAACGCCAACGAGGAGGTGGTCAGTCATCCGGCTAAGATAGCAGTGCATTACTTTAAAGGGTGGTTCTTCATAGACATGGTTGCTGCCATACCCTTTGACCTGCTCATATTTGAGGGCGGATCAGATGAG
Seq C2 exon
ACCACTACTCTGATTGGCCTGTTGAAGACTGCTCGACTGCTCCGATTGGTCCGTGTGGCTCGCAAGCTGGATCGATACTCCGAGTATGGGGCGGCTGTTCTAATGCTCCTCATGTGTATCTTTGCACTGATTGCCCATTGGTTGGCTTGCATATGGTATGCGATCGGCAATGTGGAGAGGCTCTATCTGGACCACACCATTGGCTGGTTGGATAATTTGGGCATATCCATCGGCAAGCAGTACAACATAAGTGATGATGCCTCAGGCCCCTCTATCAGGGACAAGTACGTGACAGCGCTGTATTTCACATTCAGCAGTCTGACCAGTGTGGGCTTCGGAAATGTATCACCAAATACAAACTCAGAGAAGATCTTCTCCATCTGTGTCATGCTCATTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062687-8-9,9-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=WD(100=35.2),PF0052026=Ion_trans=PU(31.0=45.8)
A:
NA
C2:
PF0052026=Ion_trans=FE(63.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTCACTCCCTACAGCGCG
R:
GTTGTACTGCTTGCCGATGGA
Band lengths:
304-534
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]