GgaALTD1012445-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000011082 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr7:20488808-20495841:+
Coord C1 exon
chr7:20488808-20489122
Coord A exon
chr7:20489123-20489233
Coord C2 exon
chr7:20495442-20495841
Length
111 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TATATCTTTTATTTTTACAGACA
3' ss Score
9.18
Exon sequences
Seq C1 exon
GTTCTATCCTTAGGGGCTGATGTTCTACCAGAATATAAACTCCAAACACCTCGCATCAACAAGTTTACTATATTGCACTATAGTCCTTTTAAAGCTGTCTGGGACTGGCTAATTTTGTTGCTGGTAATATATACCGCCATATTCACCCCTTATTCTGCTGCCTTCCTTCTGAATGATAGTGAGGAACGGAAGAGAAGAGAGTGTGGATATTCTTGCAGCCCACTGAATGTTGTAGACTTAATTGTGGATATTATGTTTATCATTGACATTCTAATCAACTTCAGAACAACATATGTAAACCAGAATGAAGAAGTG
Seq A exon
GTAAGTGACCCAGCAAAAATAGCAATTCACTACTTCAAAGGCTGGTTCCTAATTGACATGGTTGCTGCAATACCTTTTGACCTGCTGATTTTTGGCTCTGGCTCTGAAGAG
Seq C2 exon
ACAACAACATTAATAGGTCTTCTGAAGACAGCTAGACTGCTGCGTTTGGTGAGGGTAGCACGGAAATTGGACAGATATTCAGAATATGGTGCTGCAGTTCTGATGCTCCTTATGTGCATATTTGCACTAATTGCACACTGGCTTGCTTGTATTTGGTATGCCATTGGAAATGTAGAAAGACCTTACTTGGCTCACAAAATTGGCTGGCTGGATTCTTTAGGAGAGCAATTAGGAAAACACTACAATAAGAGTGATGCAAGTTCTGGACCATCCATCAAGGACAAATACGTTACAGCACTTTATTTTACATTCAGCAGTCTGACAAGTGTAGGATTTGGAAATGTTTCTCCAAACACCAACTCAGAGAAAATCTTTTCCATCTGTGTCATGTTGATTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011082-13-22,14-22-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF084125=Ion_trans_N=WD(100=36.6),PF0052026=Ion_trans=PU(31.0=45.8)
A:
NA
C2:
PF0052026=Ion_trans=FE(63.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCCCTTATTCTGCTGCCT
R:
TGTCCAATTTCCGTGCTACCC
Band lengths:
246-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]