MmuALTD1032646-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000059742 | Kcnh7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:MGI Symbol;Acc:MGI:2159566]
Coordinates
chr2:62777282-62788015:-
Coord C1 exon
chr2:62787701-62788015
Coord A exon
chr2:62787590-62787700
Coord C2 exon
chr2:62777282-62777681
Length
111 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GTACATTTTTATTTCCACAGACA
3' ss Score
8.47
Exon sequences
Seq C1 exon
GTTCTTTCTTTGGGAGCAGATGTCTTGCCAGAATATAAGCTGCAGACGCCACGCATCAACAAATTTACAATATTGCACTACAGTCCTTTCAAAGCAGTCTGGGATTGGCTTATTTTACTCTTGGTCATTTATACTGCTATATTCACCCCCTACTCTGCAGCATTTCTCCTCAATGACAGAGAGGAACAGAAAAGGCGAGAATGTGGCTATTCTTGTAGCCCTTTGAATGTGGTAGACTTGATTGTGGATATTATGTTTATTATAGACATTCTAATAAACTTCAGAACAACCTATGTAAATCAGAATGAAGAAGTG
Seq A exon
GTAAGTGATCCTGCCAAAATAGCAATACACTACTTCAAAGGCTGGTTCCTGATTGACATGGTTGCAGCCATTCCTTTTGACTTGCTGATTTTTGGATCAGGTTCTGATGAG
Seq C2 exon
ACAACGACACTAATTGGTCTTTTGAAGACTGCACGACTCCTGCGTCTTGTGCGCGTAGCCAGGAAACTGGACCGATACTCAGAATATGGTGCGGCTGTTCTAATGCTCTTGATGTGCATATTTGCCCTGATTGCCCACTGGCTGGCTTGCATCTGGTATGCGATTGGGAATGTAGAGAGGCCCTATCTGACTGACAAAATTGGATGGTTGGATTCCTTAGGAACACAAATTGGGAAACGTTACAATGACAGTGACTCGAGTTCTGGACCGTCCATTAAAGACAAATACGTCACGGCACTTTATTTTACCTTCAGCAGTCTAACCAGTGTAGGATTTGGAAATGTGTCTCCTAACACCAATTCGGAGAAAATCTTTTCCATTTGTGTCATGTTGATTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059742-19-11,20-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(31.0=45.8)
A:
NA
C2:
PF0052026=Ion_trans=FE(63.3=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAGGAACAGAAAAGGCG
R:
AGAGCATTAGAACAGCCGCAC
Band lengths:
249-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types